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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cccttgtctacacgacctttttcaatcccttgtaatgctatattttgctattatgcgtaagtatgtggacttggaagataatataaggactgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGATGACCTGCACTTGGTAGAGAATGTGCTGGATTCAGCTGCTCAGGAGTATG

Basic information

species Glycine max
transcript GLYMA08G02390.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02390.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv02s0025g01000.t01 (Vitis vinifera), 3'ss of exon 3
cccttgtctacacgacctttttcaatcccttgtaatgctatattttgctattatgcgtaagtatgtggacttggaagata---atataaggac-tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGATGACCTGCACTTGGTAGAGAATGTGCTGGATTCAGCTGCTCAGGAGTATG
   |    | || |||   |||        | ||     |||||| |  ||| | | |  ||   | ||  | | |  ||    | |||  |  |||||||||| |||| || ||| |||| || ||| ||||||||||| | ||||||||||||||| |||| ||||| ||   | |  ||||||| ||     | |||||||
---tctaattcatgacaagttttggcatgatatataaaaatatttagtcattgt-catgtgtcctttgatatagtacttatgagtgtaacaatatgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGATGACTTGCATTTGGTGGAATCTATCTTGGATTCCGCAAAGGATGAGTATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120493334|gb|EH221501.1|EH221501
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|18848551|gb|BM567727.1|BM567727
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|23729135|gb|BU762653.1|BU762653
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|10842860|gb|BF066209.1|BF066209
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAAATCTCATTGTTCAG                         TGTGTGCTAAGACTGAAAGAACCTTCTGTCTTATTGAAATGTCG
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCG
EST: gi|12496453|gb|BG047072.1|BG047072
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|209729716|gb|BW669816.1|BW669816
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGANAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|213592584|gb|DB961844.1|DB961844
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|6341379|gb|AW164203.1|AW164203
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|19269876|gb|BM886132.1|BM886132
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|17022073|gb|BM093107.1|BM093107
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|213595223|gb|DB962362.1|DB962362
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|254344832|gb|GR855596.1|GR855596
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|208091737|gb|GD887108.1|GD887108
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|298184815|gb|HO030028.1|HO030028
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGCTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|151393563|gb|EV263438.1|EV263438
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|26048381|gb|CA784877.1|CA784877
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|209720326|gb|BW669273.1|BW669273
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATG
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATG
EST: gi|208224114|gb|GE026199.1|GE026199
EST:     ATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|207768431|gb|GD740451.1|GD740451
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|26047921|gb|CA784561.1|CA784561
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|19453218|gb|BM954628.1|BM954628
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|19934634|gb|BQ079664.1|BQ079664
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|298198695|gb|HO042058.1|HO042058
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|27809414|gb|CB063836.1|CB063836
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|22522158|gb|BU080969.1|BU080969
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|19269962|gb|BM886218.1|BM886218
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|207808879|gb|GD780773.1|GD780773
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|207681736|gb|GD663393.1|GD663393
EST:     ATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|19935254|gb|BQ080284.1|BQ080284
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|298181349|gb|HO022788.1|HO022788
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTCGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|208205068|gb|GE004541.1|GE004541
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTACTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|192317055|gb|FK007836.1|FK007836
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|298177899|gb|HO021924.1|HO021924
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATCGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|192329834|gb|FK023016.1|FK023016
EST:     ACCATGGTGATCATGTGTATAGAAACCTTCTGGAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|208121494|gb|GD916151.1|GD916151
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGA
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGA
EST: gi|208038969|gb|GD835835.1|GD835835
EST:     ATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|192327864|gb|FK022437.1|FK022437
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|192331491|gb|FK022738.1|FK022738
EST:     ACCATGGTGATCATGTGTATAGAAACCTTCTGGAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|207840718|gb|GD811919.1|GD811919
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|209716815|gb|BW682257.1|BW682257
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|192317054|gb|FK007835.1|FK007835
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|13563524|gb|BG551744.1|BG551744
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|192316066|gb|FK008891.1|FK008891
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|13563500|gb|BG551720.1|BG551720
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|151396120|gb|EV265997.1|EV265997
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|8827772|gb|BE211502.1|BE211502
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|209726264|gb|BW680201.1|BW680201
EST:     -C-ATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|208181312|gb|GD978037.1|GD978037
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|23728894|gb|BU762516.1|BU762516
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|208316608|gb|GE117896.1|GE117896
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|192316067|gb|FK008892.1|FK008892
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|8669868|gb|BE190975.1|BE190975
EST:     CCATGATGATCATGTGTATAGAAACCTACGTGAA-GATCTCATCGTTCAG                         TGGTTGCTGAGACTGAAAGAGCCT
genomic: CCATGATGATCATGTGTATAGAAACCTTC-TGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCT
EST: gi|298169479|gb|HO020839.1|HO020839
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|33387695|gb|CA850902.1|CA850902
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGNTTGCTTANACTGAAAGAGCCTTCTGTCTTATTGAGATGTCNGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|207804470|gb|GD772309.1|GD772309
EST:     CCATGATGATCATGGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: CCATGATGATCAT-GTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|22522604|gb|BU081415.1|BU081415
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|298163744|gb|HO012477.1|HO012477
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|7686055|gb|AW756703.1|AW756703
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAACCTTCTGTCTTATTGAGATGT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGT
EST: gi|192304325|gb|FG996451.1|FG996451
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|10236269|gb|BE805157.1|BE805157
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTGTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|208228750|gb|GE023302.1|GE023302
EST:     ATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|20812625|gb|BQ297103.1|BQ297103
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|208115517|gb|GD913506.1|GD913506
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGCTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|27425810|gb|CA937330.1|CA937330
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|193679453|gb|FK622687.1|FK622687
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
EST: gi|7234524|gb|AW569861.1|AW569861
EST:     ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT
genomic: ACCATGATGATCATGTGTATAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttgaa ... tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctattatgcgtaagtatgtggacttggaagataatataaggactgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGATGACCTGCACTTGGTAGAGAATGTGCTGGATTCAGCTGCTCAGGAGTATG
                             aagataatataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cccttgtctacacgacctttttcaatcccttgtaatgctatattttgctattatgcgtaagtatgtggacttggaagataatataaggactgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGATGACCTGCACTTGGTAGAGAATGTGCTGGATTCAGCTGCTCAGGAGTATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT