1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaaagtttgttagctgctttcttttcatctatcatatgctacacattttttgaaagagaaatatactgagttctgacctcttttacccttttttatccagGGTGGGAAGAATTAACATTCCCGAGCTATACAAGGTCAGTGAGCTGAATGGAGGCATTCATTATTTGTATTAGGTCAAAGGCTTATCGTTCTGCTGCCTG
species | Glycine max |
transcript | GLYMA08G02180.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATGTGGATTTGGCAACAACACATCAAGACCAGGAACTCCACCACATAAG GGTGGGAAGAATTAACATTCCCGAGCTATACAAGGTCAGTGAGCTGAATGGEST: gi|193681368|gb|FK624476.1|FK624476
genomic: AATGTGGATTTGGCAACAACACATCAAGACCAGGAACTCCACCACATAAGgtaagaagat ... ttttatccagGGTGGGAAGAATTAACATTCCCGAGCTATACAAGGTCAGTGAGCTGAATGG
EST: AATGTGGATTTGGCAACAACACATCAAGACCAGGAACTCCACCACATAAG GGTGGGAAGAATTAACATTCCCGAG
genomic: AATGTGGATTTGGCAACAACACATCAAGACCAGGAACTCCACCACATAAGgtaagaagat ... ttttatccagGGTGGGAAGAATTAACATTCCCGAG
ttttttgaaagagaaatatactgagttctgacctcttttacccttttttatccagGGTGGGAAGAATTAACATTCCCGAGCTATACAAGGTCAGTGAGCTGAATGGAGGCATTCATTATTTGTATTAGGTCAAAGGCTTATCGTTCTGCTGCCTG
ttctgac putative branch site (score: 2)
ttctgacctcttttac CT-rich tract
ttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaagtttgttagctgctttcttttcatctatcatatgctacacattttttgaaagagaaatatactgagttctgacctcttttacccttttttatccagGGTGGGAAGAATTAACATTCCCGAGCTATACAAGGTCAGTGAGCTGAATGGAGGCATTCATTATTTGTATTAGGTCAAAGGCTTATCGTTCTGCTGCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - tagctgc
- - - - - - - - - - - - - - - - - - - ctacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - -aagagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgagtt