1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatgatctggttggaatgataaatcaataataaaccttttccctatttggatattttctactaagctcttgctataaaaattcataataaatgtgtattattcatgtccaatgttttgagttcccaaaaattgcataatttccttctctatctgagttttatacagGTATAGCAGTTATTTTGCTTATGGACAATCAAAGCTTGCTAATATTTTACATGCAAATGAGCTTGCAAGGCACTTGAAG
species | Glycine max |
transcript | GLYMA08G01870.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCATGAAGGGATTCAATTTGATAAGATCAATGATGAATCGGG GTATAGCAGTTATTTTGCTTATGGACAATCAAAGCTTGCTAATATTTTACAEST: gi|13789180|gb|BG651771.1|BG651771
genomic: TCATGAAGGGATTCAATTTGATAAGATCAATGATGAATCGGGgtaatgatct ... ttttatacagGTATAGCAGTTATTTTGCTTATGGACAATCAAAGCTTGCTAATATTTTACA
EST: TTTGCTTATCATGAAGGGATTCAATTTGATAAGATCAATGATGAATCGGG GTATAGCAGTTATTTTGCTTATGGACAATCAAAGCTTGCTAATATTTTACA
genomic: TTTGCTTATCATGAAGGGATTCAATTTGATAAGATCAATGATGAATCGGGgtaatgatct ... ttttatacagGTATAGCAGTTATTTTGCTTATGGACAATCAAAGCTTGCTAATATTTTACA
tgttttgagttcccaaaaattgcataatttccttctctatctgagttttatacagGTATAGCAGTTATTTTGCTTATGGACAATCAAAGCTTGCTAATATTTTACATGCAAATGAGCTTGCAAGGCACTTGAAG
aaaaattgcataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgatctggttggaatgataaatcaataataaaccttttccctatttggatattttctactaagctcttgctataaaaattcataataaatgtgtattattcatgtccaatgttttgagttcccaaaaattgcataatttccttctctatctgagttttatacagGTATAGCAGTTATTTTGCTTATGGACAATCAAAGCTTGCTAATATTTTACATGCAAATGAGCTTGCAAGGCACTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG