1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ataaataatacaccaaaaaattaatataaacaaggaattgttaattttgtgggctgtgatttgtgaaacaaggttgtactattaaatatgcatggtgcagGTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAAAAGGAATTCTTTGATGATCGAGAAGAGTGCCGAGAGGCATTGCAGTATGTTG
species | Glycine max |
transcript | GLYMA08G01850.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGTAGCTGTGCGAGCTGCAGTTGCAATGGGTGAGGAGGGCGATGTGGTT GTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAAAAGEST: gi|57575436|gb|CX548411.1|CX548411
genomic: GGGTAGCTGTGCGAGCTGCAGTTGCAATGGGTGAGGAGGGCGATGTGGTTgtaagttaat ... catggtgcagGTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAAAAG
EST: GGGTAGCTGTGCGAGCTGCAGTTGCAATGGGTGAGGAGGGCGATGTGGTT GTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAAAAGEST: gi|208299468|gb|GE100143.1|GE100143
genomic: GGGTAGCTGTGCGAGCTGCAGTTGCAATGGGTGAGGAGGGCGATGTGGTTgtaagttaat ... catggtgcagGTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAAAAG
EST: GGTGAGGAGGGCGATGTGGTT GTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAAAAGEST: gi|23728772|gb|BU762447.1|BU762447
genomic: GGTGAGGAGGGCGATGTGGTTgtaagttaat ... catggtgcagGTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAAAAG
EST: GGGTAGCTGTGCGAGCTGCAGTTGCAATGGGTGAGGAGGGCGATGTGGTT GTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAAAAGEST: gi|10233051|gb|BE801939.1|BE801939
genomic: GGGTAGCTGTGCGAGCTGCAGTTGCAATGGGTGAGGAGGGCGATGTGGTTgtaagttaat ... catggtgcagGTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAAAAG
EST: GGGTAGCTGTGCGAGCTGCAGTTGCAATGGGTGAGGAGGGCGATGTGGTT GTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAAAAG
genomic: GGGTAGCTGTGCGAGCTGCAGTTGCAATGGGTGAGGAGGGCGATGTGGTTgtaagttaat ... catggtgcagGTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAAAAG
tttgtgggctgtgatttgtgaaacaaggttgtactattaaatatgcatggtgcagGTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAAAAGGAATTCTTTGATGATCGAGAAGAGTGCCGAGAGGCATTGCAGTATGTTG
ttgtactattaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataaataatacaccaaaaaattaatataaacaaggaattgttaattttgtgggctgtgatttgtgaaacaaggttgtactattaaatatgcatggtgcagGTGGTTGCTGGCAAAGGCCATGAAACATATCAAGTAGAAGGTGATAAAAAGGAATTCTTTGATGATCGAGAAGAGTGCCGAGAGGCATTGCAGTATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
ataaataa
- - - - - caccaaa
- - - - - - - - - - - - - taaacaag
- - - - - - - - - - - - - - - - - - - - - - - ttgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttgta