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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatttatccacactgactattgttctttagcaaagttatttttcattttttccttaatcccctctctctctctgttttttttttcccctttacatgcagTCAGATTTGCCTGTAAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTAGGTGGCGCTTCTGGAAAGTTTCCACAATATTATAATGCAT

Basic information

species Glycine max
transcript GLYMA08G00750.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G00750.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G63640.1 (Arabidopsis thaliana), 3'ss of exon 5
gtgagtatttatccaca-ctgactattgttctttagcaaagttatttttcattttttccttaatcccctctctctctctgttttttttttcccctttacatgcagTCAGATTTGCCTGTAAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTAGGTGGCGCTTCTGGAAAGTTTCCACAATATTATAATGCAT
||  ||   | ||     |||  | ||  |  |   | || ||     | |   |     || |   |    | | |  |||    |||| |        |  |||| |||||||||||||| ||| |||| ||||| || || ||||| || ||||| ||||| ||||||||||| || || || || || |||||||  ||||
gtatgttcatctctgtttctggatgttacttctctaccaatttgagagttaagctgcttatagtttgcatattgtttg-gttggcatttttcgaacactttttagTCGGATTTGCCTGTAAGAGAGAGGATTTTTCTTCTTCTTGATGCAACTCAAACCTCCCTTGGTGGCGCTTCAGGGAAATTCCCTCAGTATTATACAGCAT

upper sequence: GLYMA08G00750.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0031g03190.t01 (Vitis vinifera), 3'ss of exon 3
gtgagtatttatccacactgactattgttctttagcaaagttatttttcattttttccttaatcccctctctctctctgttttttttttcccctttacatgcagTCAGATTTGCCTGTAAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTAGGTGGCGCTTCTGGAAAGTTTCCACAATATTATAATGCAT
                   |  | || |||   |  ||  | |||| |     ||  ||        |   |    ||   |||  ||  |  ||  |   ||| |||| ||||| ||| | |||  ||||||||| ||  ||||||||||||| ||||| || ||||| ||||||| |||||| || ||||| || | |||||
-------------------gtgtttttttccccaagaacatgatttctggccattaactg---tttttagttgaagctaaatttgcttatcttttctctcacagACAGACTTGCCCGTACGAGAGAAGATATTTCTTCTTTTAGATGCCACACAGACATCACTTGGTGGAGCTTCTGCAAAGTTCCCTCAATACTACAGTGCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttttccttaatcccctctctctctctgttttttttttcccctttacatgcagTCAGATTTGCCTGTAAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTAGGTGGCGCTTCTGGAAAGTTTCCACAATATTATAATGCAT
       ccttaat  putative branch site (score: 4)
       ccttaatcccctctct  CT-rich tract
                          tctgtttttttttt  TA-rich tract