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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaagttattggcaatgtcaaactcttttgctgctacattttttgtgtcgtgatgttctactcaatggaaatataatttattctagataatgactagtaggaatgacaattttgcttctctgtgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAACTGCTCCTACTGTTCAAAG

Basic information

species Glycine max
transcript GLYMA08G00740.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254329030|gb|GR833402.1|GR833402
EST:     GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAG                         GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgtgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
EST: gi|298172796|gb|HO020350.1|HO020350
EST:     GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAGG                         GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGC
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgtgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGC
EST: gi|192331064|gb|FK020284.1|FK020284
EST:     GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAG                         GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgtgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
EST: gi|192294016|gb|FG987185.1|FG987185
EST:     GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAG                         GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgtgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
EST: gi|192330970|gb|FK023125.1|FK023125
EST:     GGTGAGGTTGTTGAACATGGAGCGCTCACTGACAGCAAAACCATAGAAAG                         GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgtgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
EST: gi|254330134|gb|GR839687.1|GR839687
EST:     GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAG                         GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgtgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttattctagataatgactagtaggaatgacaattttgcttctctgtgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAACTGCTCCTACTGTTCAAAG
                                  ttttgcttctctgt  CT-rich tract
        tagataat  TA-rich tract