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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatgaattgtactcactcaattcatctaagttttcagctttacaggaaaacaaattttagcctttcatgttttcattctgacccatcttttattgtaaattttagAGTTAGTAGAGAACTTAATTCTCAAAGACAATCAAAGGAGGAGGCAGAATTACTAATGCAACAATTGATGACTATGGTTCAGTTTACAGCT

Basic information

species Glycine max
transcript GLYMA08G00670.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|41146182|gb|CK606393.1|CK606393
EST:     AATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAA                         AGTTAGTAGAGAACTTAATTCTCAAAGACAATCAAAGGAGGAGGCAGAATT
genomic: AATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatatgaa ... taaattttagAGTTAGTAGAGAACTTAATTCTCAAAGACAATCAAAGGAGGAGGCAGAATT
EST: gi|193309616|gb|FK277152.1|FK277152
EST:     AATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAA                         AGTTAGTAGAGAACTTAATTCTCAAAGACAATCAAAGGAGGAGGCAGAATT
genomic: AATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatatgaa ... taaattttagAGTTAGTAGAGAACTTAATTCTCAAAGACAATCAAAGGAGGAGGCAGAATT
EST: gi|208131205|gb|GD931092.1|GD931092
EST:     ATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATTACTTTGAGAA                         AGTTAGTAGAGAACTTAATTCTCAAAGACAATCAAAGGAGGAGGCAGA
genomic: ATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGAT-ACTTTGAGAAgtaatatgaa ... taaattttagAGTTAGTAGAGAACTTAATTCTCAAAGACAATCAAAGGAGGAGGCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaattttagcctttcatgttttcattctgacccatcttttattgtaaattttagAGTTAGTAGAGAACTTAATTCTCAAAGACAATCAAAGGAGGAGGCAGAATTACTAATGCAACAATTGATGACTATGGTTCAGTTTACAGCT
                         ttctgac  putative branch site (score: 2)
                                  atcttttattgtaaat  TA-rich tract