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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctgttattttactctatagtatcatatgctttcttgtagtcttgtggaacacaatatatggtgaattggtgatgcagtatagttatgatttttgttaacaattccaatagctgtgtctcacaacttcttgtccatctgtttgtagAAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATCCGAGGTGCTTTAAGGGCAGAGAAACCGGAGTTGCTTACTGTTATATTAC

Basic information

species Glycine max
transcript GLYMA07G40350.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40350.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os01g23680.3 (Oryza sativa), 3'ss of exon 2
gtaagtttctgttattttactctatagtatcatatgctttcttgtagtcttgtggaacacaatatatggtgaattggtgatgcagtatagttatgatttttgttaacaattccaatagctgtgtctcacaacttcttgtccatctgtttgtagAAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATCCGAGGTGCTTTAAGGGCAGAGAAACCGGAGTTGCTTACTGTTATATTAC
                                                              ||| |     |   ||  |   ||||| |  |  ||    |     ||||   || ||   ||| |  | |  || |   | ||  || ||||||||||||||| ||||||||| || |||||||||||||| ||||||||||| |||||||||||||| || || || |||||||| ||||| || ||||
-------------------------------------------------------------gtatgtcacaga---gtcttatggtataatagttcttccaatatttgattcatgta-ctac-tctaattaata-ttatttgt-tggctgcagAAAAATCATATATTCACATCTGGTGCTTCTGGGACTAATGCAGCTGTTATCCGGGGTGCTTTAAGGGCTGAAAAGCCAGAGTTGCTCACTGTAATTTTAC

upper sequence: GLYMA07G40350.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G022090_T02 (Zea mays), 3'ss of exon 1
gtaagtttctgttattttactctatagtatcatatgctttcttgtagtcttgtggaacacaatatatggtgaattggtgatgcagtatagttatgatttttgttaacaattccaatagctgtgtctcacaacttcttgtccatctgtttgtagAAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATCCGAGGTGCTTTAAGGGCAGAGAAACCGGAGTTGCTTACTGTTATATTAC
                                |||| |    |||  | ||||    || |  || |     |||  |    |||| | ||| |   |  | |||   || |   ||||  ||| | | ||  | ||||  ||   |||| |||||||||||||||  |||||||| || ||||| || ||||| ||||||||| | |||||| |||| || || ||||| ||| |||||||||| || ||||
-------------------------------gtatgttcctatgtgctgttgtcatccatatgatctccctgatttatatgccagtgt-gttttatatgatcttat--atccttctagcattgt-taataatgt-ttgtgtata-atttgcagAAAAATCATATATTTACATCTGGTGCTTCTGGAACAAATGCAGCTGTTATCAGGGGTGCTCTAAGAGCTGAAAAACCAGAGCTGCTTACTGTAATTTTAC

upper sequence: GLYMA07G40350.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G081653_T02 (Zea mays), 3'ss of exon 3
gtaagtttctgttattttactctatagtatcatatgctttcttgtagtcttgtggaacacaatatatggtgaattggtgatgcagtatagttatgatttttgttaacaattccaatagctgtgtctcacaacttcttgtccatctgtttgtagAAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATCCGAGGTGCTTTAAGGGCAGAGAAACCGGAGTTGCTTACTGTTATATTAC
                                || | |    |||    |||| |  || |  || |     |||  |    |||| | |||   ||| |  || |   | ||  |||||   | | |  | |  ||||  ||   |||| ||||||||||||||| ||||||||| || ||||| || ||||| ||||||||  | || |||||||| || || || || |||||||||||||| || ||||
-------------------------------gtaggttcctatgtgccattgtcgttcatatgatctccctgatttatatgccagtgtggttcatattatctttga---tccctctagct---tgttaataatgtttgtgtata-atttgcagAAAAATCATATATTCACATCTGGGGCTTCTGGAACAAATGCAGCTGTTATTAGGGGCGCTTTAAGAGCTGAAAAGCCAGAGTTGCTTACTGTAATTTTAC

upper sequence: GLYMA07G40350.2 (Glycine max), 3'ss of exon 3
lower sequence: AT2G43945.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagtttctgttattttactctatagtatcatatgctttcttgtagtcttgtggaacacaatatatggtgaattggtgatgcagtatagttatgatttttgttaacaattccaatagctgtgtctcacaacttcttgtccatctgtttgtagAAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATCCGAGGTGCTTTAAGGGCAGAGAAACCGGAGTTGCTTACTGTTATATTAC
                                                                    || | |   |    |   ||  |  ||  |||   |  |   |||| |       |||| | | |  ||   |   |  ||| |||||||||||||||||||||| || |||||||| ||||||||||| || ||| ||||||| || || ||||||| ||| ||| ||||||| || ||  |||
--------------------------------------------------------------------gtaagtcattagaacttcatcctcttgtgtttgact--ccgatccatttaaaacatctctcgaataatt---cggtttcttgcagAAAAATCATATATACACATCAGGTGCATCTGGAACTAATGCTGCAGTCATCAGAGGTGCATTGAGAGCAGAGAGACCAGAGCTGCTTACAGTAATTCTAC

upper sequence: GLYMA07G40350.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv10s0042g00120.t01 (Vitis vinifera), 3'ss of exon 2
gtaagtttctgttattttactcta--tagtatcatatgctttcttgtagtcttgtggaacacaatatatggtgaattggtgatgcagtata--gttatgatttttgttaacaattccaatagctgtgtctcac-----aacttcttgtccatctgt---------ttgtagAAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATCCGAGGTGCTTTAAGGGCAGAGAAACCGGAGTTGCTTACTGTTATATTAC
||| |    ||  | || | ||||  |  | | |||||     || |   || ||    || |  | ||| |   |  ||  || |   ||    | | || || | |       | |  |  |||  || |      |  |  |||     | ||          || || |||| || || || ||||| |||||||||||||| ||||| ||||||||  |||||||||| || || |||||||| ||  |||||||||| || || |
gtatgacattggaacttcagtctagtttattttatatgtaacattatgtgctcgtcaggcagaccagatgttttctcagtactggatcttaccactttcatgttggctgcatgggcgagcatatgttcctgattttcaaggtcattgctttaccgtaattttttcctgcagGAAAACCACATTTATACATCAGGAGCATCTGGGACGAATGCGGCTGTTATAAGAGGTGCTTTGAGAGCGGAGAAACCAGAACTGCTTACTGTAATCTTGC

upper sequence: GLYMA07G40350.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0094g01380.t01 (Vitis vinifera), 3'ss of exon 4
gtaagtttctgttattttactctatagtatcatatgctttcttgtagtcttgtggaacacaatatatggtgaattggtgatgcagtatagttatgatttttgttaacaattccaatagctgtgtctcacaacttcttgtccatctgtt-tgtagAAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATCCGAGGTGCTTTAAGGGCAGAGAAACCGGAGTTGCTTACTGTTATATTAC
||| | | |||| | ||   ||  || |||  ||||  |      |   ||||||       |   |  |||       |||| |      |  || | |      | |||   |||    ||  ||  || ||| | |   | | |  |  ||||||| || || |  ||||| ||||||||||| |||||||| ||||||||| |||||||  |||| ||||||||||| ||| |||||||||| || ||||
gtatgatgctgtaacttctatcagta-tattttatgtct------aacattgtggg------tgcttattgagcccaacatgctgc-----tgggactct------ccattttcatattcatgcttctgaaattcctatgattatttcctacagAAAAACCACATTTTTACATCAGGAGCATCTGGCACTAATGCAGCTGTTATCAGAGGTGCGCTAAGAGCAGAGAAACCAGAGCTGCTTACTGTAATCTTAC

upper sequence: GLYMA07G40350.2 (Glycine max), 3'ss of exon 3
lower sequence: PP1S134_28V6.1 (Physcomitrella patens), 3'ss of exon 3
gtaagtttctgttattttactctatagtatcatatgctttcttgtagtcttgtggaacacaatatatggtgaattggtgatgcagtatagttatgatttttgttaacaattccaatagctgtgtctcacaacttcttgtccatctgtttgtagAAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATCCGAGGTGCTTTAAGGGCAGAGAAACCGGAGTTGCTTACTGTTATATTAC
                                          ||  |||  ||| | |  |||   |  |  |   || ||     | | ||   ||  |||    || | |  | | ||       ||  ||| |  |   ||||||||||||| ||||||||||| |||||||||||| | || || ||||| || |||||  | || || || || || || | ||| ||  | |||||||| ||  | |
------------------------------------------tgctgtca-gtgtaccttaatcagtactccaaaagtaattttccacaattcc-atcattg----cagtgcatagaact-----caactccttttcatttttctgtttgtagAATAATCATATATATACATCTGGAGCAGCGGGAACAAATGCGGCGGTTATAAGGGGAGCATTGAGAGCTGAAAGACCAGACCTTCTTACTGTAATTCTGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398252|gb|EV268130.1|EV268130
EST:     TCATGCACCAAGAACTAATTGAGATTCTTAGCTATGCTATGGTTATAACT                         AAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATC
genomic: TCATGCACCAAGAACTAATTGAGATTCTTAGCTATGCTATGGTTATAACTgtaagtttct ... ctgtttgtagAAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATC
EST: gi|31469040|gb|CD411068.1|CD411068
EST:     TCATGCACCAAGAACTAATTGAGATTCTTAGCTATGCTATGGTTATAACT                         AAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATC
genomic: TCATGCACCAAGAACTAATTGAGATTCTTAGCTATGCTATGGTTATAACTgtaagtttct ... ctgtttgtagAAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATC
EST: gi|15664820|gb|BI702191.1|BI702191
EST:     TCATGCACCAAGAACTAATTGAGATTCTTAGCTATGCTATGGTTATAACT                         AAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATC
genomic: TCATGCACCAAGAACTAATTGAGATTCTTAGCTATGCTATGGTTATAACTgtaagtttct ... ctgtttgtagAAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATC
EST: gi|31466950|gb|CD408978.1|CD408978
EST:     TCATGCACCAAGAACTAATTGAGATTCTTAGCTATGCTATGGTTATAACT                         AACAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATC
genomic: TCATGCACCAAGAACTAATTGAGATTCTTAGCTATGCTATGGTTATAACTgtaagtttct ... ctgtttgtagAAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATC
EST: gi|21256394|gb|BQ453282.1|BQ453282
EST:     TCATGCACCAAGAACTAATTGAGATTCTTAGCTATGCTATGGTTATAACT                         AAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATC
genomic: TCATGCACCAAGAACTAATTGAGATTCTTAGCTATGCTATGGTTATAACTgtaagtttct ... ctgtttgtagAAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATC
EST: gi|19348270|gb|BM892802.1|BM892802
EST:     TCATGCACCAAGAACTAATTGAGATTCTTAGCTATGCTATGGTTATAACT                         AAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATC
genomic: TCATGCACCAAGAACTAATTGAGATTCTTAGCTATGCTATGGTTATAACTgtaagtttct ... ctgtttgtagAAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATC
EST: gi|207799176|gb|GD768203.1|GD768203
EST:     TCATGCACCAAGAACTAATTGAGATTCTTAGCTATGCTATGGTTATAACT                         AAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATC
genomic: TCATGCACCAAGAACTAATTGAGATTCTTAGCTATGCTATGGTTATAACTgtaagtttct ... ctgtttgtagAAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATC
EST: gi|207709086|gb|GD692196.1|GD692196
EST:     TCATGCACCAAGAACTAATTGAGATTCTTAGCTATGCTATGGTTATAACT                         AAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATC
genomic: TCATGCACCAAGAACTAATTGAGATTCTTAGCTATGCTATGGTTATAACTgtaagtttct ... ctgtttgtagAAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATC
EST: gi|22928767|gb|BU545906.1|BU545906
EST:     TATGCTATGGTTATAACT                         AAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATC
genomic: TATGCTATGGTTATAACTgtaagtttct ... ctgtttgtagAAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATC
EST: gi|9902296|gb|BE611264.1|BE611264
EST:     AAGAACTAATTGAGATTCTTAGCTATGCTATGGTTATAACT                         AAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATC
genomic: AAGAACTAATTGAGATTCTTAGCTATGCTATGGTTATAACTgtaagtttct ... ctgtttgtagAAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttaacaattccaatagctgtgtctcacaacttcttgtccatctgtttgtagAAAAATCATATATACACATCTGGAGCATCTGGGACTAATGCTGCTGTTATCCGAGGTGCTTTAAGGGCAGAGAAACCGGAGTTGCTTACTGTTATATTAC
                                 cttcttgtccatct  CT-rich tract
     taacaatt  TA-rich tract