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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacccactttcacaccacaattgtttctgaattaaattatcatgtttctcatcctcttgctcttttttcatttctttctgtagGCGCCCTTCGGCATTCTCTACAGGATAGACTAAGCAAAGGTTCATCTGGTAGGAGTCGTGATGAAATATATCTCAAACTACGTACCAGTACAG

Basic information

species Glycine max
transcript GLYMA07G40300.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40300.2 (Glycine max), 3'ss of exon 3
lower sequence: AT1G59610.1 (Arabidopsis thaliana), 3'ss of exon 3
-------------------------------------------gtaagacccactttcacaccacaattgtttctgaattaaattatcatgtttctcatcctcttgctcttttttcatttcttt-ctgtagGCGCCCTTCGGCATTCTCTACAGGATAGACTAAGCAAAGGTTCATCTGGTAGGAGTCGTGATGAAATATATCTCAAACTACGTACCAGTACAG
                                           || | | | | ||   ||    |  ||    || |||| ||||  || |  || ||  |   | | ||||   || | | |  |  ||| || ||  ||||||| ||||| ||||| || ||||||||  | || || ||| |||||||||||||||| || ||||| |||||||| ||||
gtaagagctccctatgtgcacatatgcaatttagcaatgatttgtga-agctatttctgcatgtaagatgcaa-tgcattagattaatatttgactaatatttccgtttttttcgaatgtgtgtattacagGTGCACTAAGGCATTCACTACAAGATAGGCTTAGCAAAGGAGCTTCAGGAAGGGGTCGTGATGAAATATACCTAAAACTTCGTACCAGCACAG

upper sequence: GLYMA07G40300.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0035g01740.t01 (Vitis vinifera), 3'ss of exon 3
-----------------------------------------------------------------------------------gta-agacccactttca-caccacaattgtttctgaattaa-attatcatgtttctcatc----ctcttgctcttttttcatttctttctgtagGCGCCCTTCGGCATTCTCTACAGGATAGACTAAGCAAAGGTTCATCTGGTAGGAGTCGTGATGAAATATATCTCAAACTACGTACCAGTACAG
                                                                                   | | ||| ||| |   | ||    ||      |||||||   ||||| |||  | | | |    | |||| | | ||||  |    |  | |||| || ||||||||||||||||||||||| || || ||  ||||||| || | ||||||||||||||||||||| || || || || |||||||
gtaaggcctcttaccatagggcctataattttactttgctcccctaaaggttctccaccatcacatgttgatgtatatcaactgcatagatccattggtagcaatttaaaatggactgaattgttattatgatggctttaaccatgacccttgttttcttttt-tggtgtattatagGTGCTCTTCGGCATTCTCTACAGGATAGGCTTAGTAAGAGTTCATCAGGCAAGAGTCGTGATGAAATATATCTGAAGCTTCGCACTAGTACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattaaattatcatgtttctcatcctcttgctcttttttcatttctttctgtagGCGCCCTTCGGCATTCTCTACAGGATAGACTAAGCAAAGGTTCATCTGGTAGGAGTCGTGATGAAATATATCTCAAACTACGTACCAGTACAG
           tcatgtttctcatcct  CT-rich tract
                                  ttttttcatttcttt  TA-rich tract