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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagtgcattcaggttgctgcaagaagatgaagtaacacatgataaagcattagtgttgttttaatttatttatcagttcaaatttgattaaaaattgcagTCTTGCTCCGTTAGTGAGGAAGGTGAGTGAGGTAAGGGTTGTGGAAATGACCAGTAAACTATGTGACAAATTGCTAAATGGGAAGGATCAGCATCGCGAC

Basic information

species Glycine max
transcript GLYMA07G40230.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40230.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G168629_T05 (Zea mays), 3'ss of exon 3
---tagtgcattcaggttgctgcaagaagatgaagtaac-acatgataaagcattagtgttgttttaatttatttatcagttcaaatttgattaaaaattgcagTCTTGCTCCGTTAGTGAGGAAGGTGAGTGAGGTAAGGGTTGTGGAAATGACCAGTAAACTATGTGACAAATTGCTAAATGGGAAGGATCAGCATCGCGAC
    | |||||     ||| ||    |  |||   |  | |||   |      |  |     | |  | ||   || | |||  ||| |  |      ||| ||  | || ||  | || | ||||||  ||||||  ||||||||||| ||||||| |||||| ||||| || ||| ||||||| ||||| |||||||| || 
tttcaatgcatgagaattgttgttctattatgttcttcccacagtttttgttttctgcacgttgtggaattcactaactgttgtaatgttgtct----ttgtagCTTGGCCCCACTCGTCAAGAAGGTTGGTGAGGACAGGGTTGTGGAGATGACCAATAAACTTTGTGATAAGTTGATAAATGGAAAGGACCAGCATCGGGAT

upper sequence: GLYMA07G40230.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 3'ss of exon 4
--tagtgcattcaggttgctgcaagaagatgaagtaacacatgataaagcattagtgttg-ttttaatttatttatcagttcaaatttgattaaaa-attgcagTCTTGCTCCGTTAGTGAGGAAGGTGAGTGAGGTAAGGGTTGTGGAAATGACCAGTAAACTATGTGACAAATTGCTAAATGGGAAGGATCAGCATCGCGAC
  | | ||||  | | |  ||     |  ||||   |||  |  |  | || |    ||| |||| || || || ||  | |   ||| | ||    ||||||||||||| || || || | |||||| ||||||  | |  | ||||| ||||||| |||||| || || ||||||||||||||||| ||||| ||||| |||
ttttgggcatgaatgcttttg----gatttgaacatacaagtagttgaacagttacattgctttttatgtaattctcgttccttgttttaatatggcattgcagTCTTGCACCTTTGGTCAAGAAGGTCAGTGAGACACGACTAGTGGAGATGACCAATAAACTTTGCGATAAATTGCTAAATGGGAAAGATCAACATCGTGAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213610988|gb|DB970915.1|DB970915
EST:     CAACAACTTGATGATGCAGCTGGTGATGTTTCTGGACTTGCTGTCAAATG                         TCTTGCTCCGTTAGTGAGGAAGGTGAGTGAGGTAAGGGTTGTGGAAATGAC
genomic: CAACAACTTGATGATGCAGCTGGTGATGTTTCTGGACTTGCTGTCAAATGgtacaccgta ... aaaattgcagTCTTGCTCCGTTAGTGAGGAAGGTGAGTGAGGTAAGGGTTGTGGAAATGAC
EST: gi|213600096|gb|DB964302.1|DB964302
EST:     CAACAACTTGATGATGCAGCTGGTGATGTTTCTGGACTTGCTGTCAAATG                         TCTTGCTCCGTTAGTGAGGAAGGTGAGTGAGGTAAGGGTTGTGGAAATGAC
genomic: CAACAACTTGATGATGCAGCTGGTGATGTTTCTGGACTTGCTGTCAAATGgtacaccgta ... aaaattgcagTCTTGCTCCGTTAGTGAGGAAGGTGAGTGAGGTAAGGGTTGTGGAAATGAC
EST: gi|213613547|gb|DB963263.1|DB963263
EST:     CAACAACTTGATGATGCAGCTGGTGATGTTTCTGGACTTGCTGTCAAATG                         TCTTGCTCCGTTAGTGAGGAAGGTGAGTGAGGTAAGGGTTGTGGAAATGAC
genomic: CAACAACTTGATGATGCAGCTGGTGATGTTTCTGGACTTGCTGTCAAATGgtacaccgta ... aaaattgcagTCTTGCTCCGTTAGTGAGGAAGGTGAGTGAGGTAAGGGTTGTGGAAATGAC
EST: gi|209717236|gb|BW657705.1|BW657705
EST:     CAACAACTTGATGATGCAGCTGGTGATGTTTCTGGACTTGCTGTCAAATG                         TCTTGCTCCGTTAGTGAG
genomic: CAACAACTTGATGATGCAGCTGGTGATGTTTCTGGACTTGCTGTCAAATGgtacaccgta ... aaaattgcagTCTTGCTCCGTTAGTGAG
EST: gi|213619876|gb|DB971135.1|DB971135
EST:     CAACAACTTGATGATGCAGCTGGTGATGTTTCTGGACTTGCTGTCAAATG                         TCTTGCTCCGTTAGTGAGGAAGGTGAGTGAGGTAAGGGTTGTGGAAATGAC
genomic: CAACAACTTGATGATGCAGCTGGTGATGTTTCTGGACTTGCTGTCAAATGgtacaccgta ... aaaattgcagTCTTGCTCCGTTAGTGAGGAAGGTGAGTGAGGTAAGGGTTGTGGAAATGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcattagtgttgttttaatttatttatcagttcaaatttgattaaaaattgcagTCTTGCTCCGTTAGTGAGGAAGGTGAGTGAGGTAAGGGTTGTGGAAATGACCAGTAAACTATGTGACAAATTGCTAAATGGGAAGGATCAGCATCGCGAC
             ttttaatttatttatc  TA-rich tract