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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgctagttttctgctccataataataatgatgatgtaatacaagtgtctgggctaataatctttctctgtcttggtgattttgtagATTGATTACATCCTTGGGAAGAACCCTCGGAAAATGAGCTATGTTGTAGGTTTTGGTAATCATTATCCAAAACATGTTCACCATAGAGGTGCGTCTATAC

Basic information

species Glycine max
transcript GLYMA07G40090.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40090.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G24260.1 (Arabidopsis thaliana), 3'ss of exon 5
gtgggtgctagttttctgctccataataataatgatgatgtaatacaagtgtctgggctaataatctttctctgtcttggtgattttgtagATTGATTACATCCTTGGGAAGAACCCTCGGAAAATGAGCTATGTTGTAGGTTTTGGTAATCATTATCCAAAACATGTTCACCATAGAGGTGCGTCTATAC
    ||  |  ||  |   |  |  | || ||  | ||| |     |||   ||   || ||     || | ||||||  || ||| | |||||||||| || ||||| || ||||||||||| ||||| |||||||| |||| |||  | |  || || ||||| || || || ||||| || || || |
----gta-tgattcacaaatgaaggaaaacaaacaagattttg---aaggagcttatctgatggaactt-tgtgtcttt-tgttttggcagATTGATTATATACTTGGTAAAAACCCTCGGAAGATGAGTTATGTTGTGGGTTATGGGCAACGGTACCCGAAACAAGTGCATCACAGAGGAGCTTCAATTC

upper sequence: GLYMA07G40090.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G49720.1 (Arabidopsis thaliana), 3'ss of exon 5
------------------------------------------------------------------gtgggtgctagttttctgctccataataataatgatgatgtaa-tacaagtgtctgggctaata----------atctttctctgtcttg--gtgattttgtagATTGATTACATCCTTGGGAAGAACCCTCGGAAAATGAGCTATGTTGTAGGTTTTGGTAATCATTATCCAAAACATGTTCACCATAGAGGTGCGTCTATAC
                                                                       ||  | ||||   |   ||  ||  ||      | |||   | | | | |    | | |          || |  ||| | ||||  ||  ||| | |||||||||| || || || || ||||||||||||||||| ||||| || |||||||| |   | || |||| |||||| || || ||||| || || ||||
gtattgcttcttttcctttactctttacagaaatggtaatctcagatatagtaatggataagatccaaaaatgacacttttaaccaagattgtacgaagatctttttaaactccattttttattttgacatctaaattggatttaactcggccttgctgtattttggcagATTGATTATATACTGGGTAAAAACCCTCGGAAAATGAGTTATGTCGTTGGTTTTGGCACAAAATACCCAAGACATGTGCATCACAGAGGAGCTTCGATAC

upper sequence: GLYMA07G40090.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0035g02180.t01 (Vitis vinifera), 3'ss of exon 5
-------------------------------gtgggtgctagttt-tctgctc-cataataataatgatgatgtaatacaagtgtctgggctaataatctttctctgtcttggtgattttgtagATTGATTACATCCTTGGGAAGAACCCTCGGAAAATGAGCTATGTTGTAGGTTTTGGTAATCATTATCCAAAACATGTTCACCATAGAGGTGCGTCTATAC
                               ||| | |    |   |||||||   || ||||||  ||  |   |  |||     |    ||  ||| ||||       ||    | | | |||||||||||||||| || || || ||||| || ||||||||| ||| ||||||||| ||||||||||||| |||||| |||||||||||||| ||||| |
gtatgcgatatctgattcctcaattaaagttgtgagggaacatgagtctgctcatgtagtaataaatattgttggaaccaacaaggtcactta--aatttttcatatctctgaccttctggcagATTGATTACATCCTCGGCAAAAATCCTCGAAAGATGAGCTATATTGCAGGTTTTGGCAATCATTATCCAAGACATGTCCACCATAGAGGTGCATCTATCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15200976|gb|BI424628.1|BI424628
EST:     GACCCAATTTCTTCTCAACTGATGTTCTTCGAGACTTTGCAAAGACCCAG                         ATTGATTACATCCTTGGGAAGAACCCTCGGAAAATGAGCTATGTTGTAGGT
genomic: GACCCAATTTCTTCTCAACTGATGTTCTTCGAGACTTTGCAAAGACCCAGgtgggtgcta ... gattttgtagATTGATTACATCCTTGGGAAGAACCCTCGGAAAATGAGCTATGTTGTAGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgtaatacaagtgtctgggctaataatctttctctgtcttggtgattttgtagATTGATTACATCCTTGGGAAGAACCCTCGGAAAATGAGCTATGTTGTAGGTTTTGGTAATCATTATCCAAAACATGTTCACCATAGAGGTGCGTCTATAC
                   ggctaat  putative branch site (score: 3)
                      taataatcttt  TA-rich tract