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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaatgtgttttacttgatttctgtagcttttgagtaatgatttttgcagggatttttctctcatctactctatttgttgtctacagGAATGCACACCAACACATAGAGGAGGGAAGTATTATGATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAA

Basic information

species Glycine max
transcript GLYMA07G40060.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40060.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv00s0568g00010.t01 (Vitis vinifera), 3'ss of exon 3
gtacaatgtgttttacttgatttctgtagcttttga--gtaatgatttttgcagggatttttctctcatctactctatttgttgtctac-----agGAATGCACACCAACACATAGAGGAGGGAAGTATTATGATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAA
    ||| | |||  || | ||   || |  |   |  ||| | ||  | | |   | ||| ||| ||  |   || ||| || | |||     |||| ||||     ||| | | ||| ||    |||||||| ||||||| ||||||  ||||||||||||| || || ||||||||||||
--gtaatat-tttccctaggttctagtggtataacactgtacttataatagtacatacttt-ctcacacttgtcctttttcttatttacttgttagGAGTGCAAGGTCACAAAGAAAGGTGGAGCTTATTATGAATTCTGGCGAAACACAAGATCTGTGAAATCGACCATCCTTCATTTCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151396369|gb|EV266246.1|EV266246
EST:     AGTACAAGAACTATGAAAATATACCTCATTCAGGCGAACGGTCAGAAAAG                         GAATGCACACCAACACATAGAGGAGGGAAGTATTATGATTTCTGGCAAAAC
genomic: AGTACAAGAACTATGAAAATATACCTCATTCAGGCGAACGGTCAGAAAAGgtacaatgtg ... ttgtctacagGAATGCACACCAACACATAGAGGAGGGAAGTATTATGATTTCTGGCAAAAC
EST: gi|192324872|gb|FK015368.1|FK015368
EST:     AGTACAAGAACTATGAAAATATACCTCATTCAGGCGAACGGTCAGAAAAG                         GAATGCACACCAACACATAGAGGAGGGAAGTATTATGATTTCTGGCAAAAC
genomic: AGTACAAGAACTATGAAAATATACCTCATTCAGGCGAACGGTCAGAAAAGgtacaatgtg ... ttgtctacagGAATGCACACCAACACATAGAGGAGGGAAGTATTATGATTTCTGGCAAAAC
EST: gi|19345980|gb|BM890860.1|BM890860
EST:     AGTACAAGAACTATGAAAATATACCTCATTCAGGCGAACGGTCAGAAAAG                         GAATGCACACCAACACATAGAGGAGGGAAGTATTATGATTTCTGGCAAAAC
genomic: AGTACAAGAACTATGAAAATATACCTCATTCAGGCGAACGGTCAGAAAAGgtacaatgtg ... ttgtctacagGAATGCACACCAACACATAGAGGAGGGAAGTATTATGATTTCTGGCAAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtaatgatttttgcagggatttttctctcatctactctatttgttgtctacagGAATGCACACCAACACATAGAGGAGGGAAGTATTATGATTTCTGGCAAAACACTCGATCTGTGAAATCAACAATACTTCATTTCCAA
     atgattttt  TA-rich tract