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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggggttttgaaatattgactatggctgtttaatatggatcatctgatatcagaatctgactttaaaattgaatgtttcttgtaataaacagCTCGTTGCCCTGGCACAGGTGGGACACGATATCAACTCAGATATCCTTAAAACTGAAA

Basic information

species Glycine max
transcript GLYMA07G39450.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395965|gb|EV265842.1|EV265842
EST:     CCAAAAGACAAGGATATTTGGGTTTTCAAGAGTTTGTTATGGCAATGCAG                         CTCGTTGCCCTGGCACAGGTGGGACACGATATCAACTCAGATATCCTTAAA
genomic: CCAAAAGACAAGGATATTTGGGTTTTCAAGAGTTTGTTATGGCAATGCAGgtttggggtt ... taataaacagCTCGTTGCCCTGGCACAGGTGGGACACGATATCAACTCAGATATCCTTAAA
EST: gi|298197514|gb|HO044993.1|HO044993
EST:     CCAAAAGACAAGGATATTTGGGTTTTCAAGAGTTTGTTATGGCAATGCAG                         CTCGTTGCCCTGGCACAGGTGGGACACGATATCAACTCAGATATCCTTAAA
genomic: CCAAAAGACAAGGATATTTGGGTTTTCAAGAGTTTGTTATGGCAATGCAGgtttggggtt ... taataaacagCTCGTTGCCCTGGCACAGGTGGGACACGATATCAACTCAGATATCCTTAAA
EST: gi|298174570|gb|HO017793.1|HO017793
EST:     CCAAAAGGCAAGGATATTTGGGTTTTCAAGAGTTTGTTATGGCAATGCAG                         CTCGTTGCCCTGGCACAGGTGGGACACGGTATCAACTCAGATATCCTTAAA
genomic: CCAAAAGACAAGGATATTTGGGTTTTCAAGAGTTTGTTATGGCAATGCAGgtttggggtt ... taataaacagCTCGTTGCCCTGGCACAGGTGGGACACGATATCAACTCAGATATCCTTAAA
EST: gi|151413214|gb|EV283022.1|EV283022
EST:     CAAGAGTTTGTTATGGCAATGCAG                         CTCGTTGCCCTGGCACAGGTGGGACACGATATCAACTCAGATATCCTTAAA
genomic: CAAGAGTTTGTTATGGCAATGCAGgtttggggtt ... taataaacagCTCGTTGCCCTGGCACAGGTGGGACACGATATCAACTCAGATATCCTTAAA
EST: gi|7146390|gb|AW508312.1|AW508312
EST:     CCAAAAGACAAGGATATTTGGGTTTTCAAGAGTTTGTTATGGCAATGCAG                         CTCGTTGCCCTGGCACAGGTGGGACACGATATCAACTCAGATATCCTTAAA
genomic: CCAAAAGACAAGGATATTTGGGTTTTCAAGAGTTTGTTATGGCAATGCAGgtttggggtt ... taataaacagCTCGTTGCCCTGGCACAGGTGGGACACGATATCAACTCAGATATCCTTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatcatctgatatcagaatctgactttaaaattgaatgtttcttgtaataaacagCTCGTTGCCCTGGCACAGGTGGGACACGATATCAACTCAGATATCCTTAAAACTGAAA
                 atctgac  putative branch site (score: 3)
                                      tttcttgt  putative PPT
                        tttaaaattgaatgtt  TA-rich tract