Sequence
atgc intronic sequence ATGC exonic sequence...ataagccgaccaaaaaaaaatcttcagaacatagactagtatgtagtaaacaaagaactatactcctctaggttataaaagagtgcatgttctatttcagGTTCTTGCAGCAACCCAAACTCCAGGGGAGGCAGGTAAAAAGTGGTTTCAAGGTACTGCTGATGCTGTGAGGCAGTTCCACTGGCTCTTTGAG
Basic information
species | Glycine max |
transcript | GLYMA07G38820.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G38820.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G391936_T03 (Zea mays), 3'ss of exon 3
------------------------------------------ataagccgaccaa---aaaaaaatcttcagaacatagactagtatgtagtaaacaaagaactatactcctctaggttataaaagagtgcatgttctatttcagGTTCTTGCAGCAACCCAAACTCCAGGGGAGGCAGGTAAAAAGTGGTTTCAAGGTACTGCTGATGCTGTGAGGCAGTTCCACTGGCTCTTTGAG
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gtgccaactccagaatatacgtatatatatagttctctagggaatggctgacaaagccacaaggattcgtggttcaacacttcatctctggtgatctggaaagggtattt------gacagatcgggattctgactgtttttcagGTTCTAGCAGCAACCCAGAGGCCTGGAACGGAGGGGAAAAGGTGGTTTCAGGGTACTGCTGATGCAGTTCGGCAGTTCGACTGGCTTTTCGAT
upper sequence: GLYMA07G38820.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0020g02880.t01 (Vitis vinifera), 3'ss of exon 3
ataagccgaccaaaaaaaaatcttcagaacatagactagtatgtagtaaacaaagaactatactcct-ctagg----ttataaaagagtg-catgttctatttcagGTTCTTGCAGCAACCCAAACTCCAGGGGAGGCAGGTAAAAAGTGGTTTCAAGGTACTGCTGATGCTGTGAGGCAGTTCCACTGGCTCTTTGAG
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------agaccgatatagtcttagccaaatgttaccatgaatatggatgtaagagttccatttctttaccaggagactgattaaagaatggtttcttgtatgccagGCTCTAGCAGCCACTCAAACTCCAGGGGAGGCTGGTAAAAGATGGTTCCAGGGCACTGCAGATGCTGTGCGGCAGTTCCATTGGCTCTTTGAG
upper sequence: GLYMA07G38820.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ25399 (Selaginella moellendorffii), 3'ss of exon 3
ataagccgaccaaaaaaaaatcttcagaacatagactagtatgtagtaaacaaagaactatactcctctaggttataaaagagtgcatgttctatttcagGTTCTTGCAGCAACCCAAACTCCAGGGGAGGCAGGTAAAAAGTGGTTTCAAGGTACTGCTGATGCTGTGAGGCAGTTCCACTGGCTCTTTGAG
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-----------gtggaggaaatgagagagc-tagaaaaatctgt--tatacggag---tgtttggtctcagatcttt---gtgcgtgtgattgatgt-agGTACTGGCAGCAACGCAAACTCCAGGGGAGTCTGGTATGAATTGGTTTCAAGGGACCGCGGACGCCGTGAGGCAGTTCACTTGGCTTTTTGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151404121|gb|EV273931.1|EV273931EST: GCGCTTACAACTCTGGTAATGGAGTCACCTTTGGAGATGGCTATGTAGAG GTTCTTGCAGCAACCCAAACTCCAGGGGAGGCAGGTAAAAAGTGGTTTCAA
genomic: GCGCTTACAACTCTGGTAATGGAGTCACCTTTGGAGATGGCTATGTAGAGgtatctccca ... tctatttcagGTTCTTGCAGCAACCCAAACTCCAGGGGAGGCAGGTAAAAAGTGGTTTCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtaaacaaagaactatactcctctaggttataaaagagtgcatgttctatttcagGTTCTTGCAGCAACCCAAACTCCAGGGGAGGCAGGTAAAAAGTGGTTTCAAGGTACTGCTGATGCTGTGAGGCAGTTCCACTGGCTCTTTGAG
ttctatttc CT-rich tract
ttataaaaga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ataagccgaccaaaaaaaaatcttcagaacatagactagtatgtagtaaacaaagaactatactcctctaggttataaaagagtgcatgttctatttcagGTTCTTGCAGCAACCCAAACTCCAGGGGAGGCAGGTAAAAAGTGGTTTCAAGGTACTGCTGATGCTGTGAGGCAGTTCCACTGGCTCTTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - -ccgacca
- - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - -tatgtag
- - - - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgt