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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agattaaccattgaactatactgattggttactctgttatgttgaatacaaatggttcctccacttatcccttaccttttgatttatactaattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAAGCTAGGAGAAAAAATGTTGGTGGTAAGGTACTGGGTTTCTTCTACTAGA

Basic information

species Glycine max
transcript GLYMA07G38520.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38520.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G059624_T01 (Zea mays), 3'ss of exon 2
---------------------agattaac-cattgaactatactgattggttactctgttatgttgaatacaaatggttcctccacttatcccttaccttttgatttatactaattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAAGCTAGGAGAAAAAATGTTGGTGGTAAGGTACTGGGTTTCTTCTACTAGA
                     | |||      |  |||||||  |||     | |  ||  |  |  || ||  | | | ||  | ||||   ||| ||     |   |    ||| |||| ||||| | |||||| ||||| ||||| || ||||||||||||||| ||||||| | ||| || ||||||||||| || || || ||||| ||||||    
gtacgtccgttccttcgctacacattcttgtttctaactata--gatctagcattgagtatttgtacatgcagtttgattctata-ttataatttaactagctttccctgtccattgtGCAATTTGGTTTTATTGTCTTGACCACCTCGGCTGGCATCATGGATCACAAAGAAGCCACGAGGAAGAATGTTGGTGGAAATGTGCTAGGTTTTTTCTAC----

upper sequence: GLYMA07G38520.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G39590.1 (Arabidopsis thaliana), 3'ss of exon 2
-----agattaaccattgaactatactgattggttactctg------ttatgttgaatacaaatggttcctccacttatcccttaccttttgatttatactaatttt-gcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAAGCTAGGAGAAAAAATGTTGGTGGTAAGGTACTGGGTTTCTTCTACTAGA
     | | ||||||||    |||  | ||   |  ||  |      | ||| |  ||     | | || |      ||    || |     || | ||| || ||  |||||||||||| |||||  |||| || || || || |||||||| || ||||| |||||||  ||||||||||| || || || || ||||| ||||||||| 
gtaaaaaactaaccattcttttat-ttaataaatctctgagaccaattcatggtttattgtgtttgatcattgtgggatattctaacaaagtatgtgtaccaaattgagcagTTTGGGTACATTGTCCTGACAACATCAGCTGGAATCATGGACCATGAAGAGGCTAGGAAGAAAAATGTTGGGGGCAAAGTGCTTGGTTTTTTCTACTAG-

upper sequence: GLYMA07G38520.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0040g02460.t01 (Vitis vinifera), 3'ss of exon 3
-----------------------------agattaaccattgaactatactgattggttactctgttatgttgaata---caaatggttcctccacttatcccttaccttttgatttatactaatt-----ttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAAGCTAGGAGAAAAAATGTTGGTGGTAAGGTACTGGGTTTCTTCTACTAGA
                             | |  ||  |   || |   || |    | |   ||  |   || |     | |||  ||  ||      |    |  |||  | |   || | | |     ||||||||||| |||||||| ||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||| || || || |||||||| |||||| 
gttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatgaacttggcaaactgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAAGCTAGGAGAAAAAATGTTGGTGGCAAAGTTCTTGGTTTCTTTTACTAGT

upper sequence: GLYMA07G38520.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 4
-agattaac--cattgaactatactgattggttactctgttatgttgaatacaaatggttcctccacttatcccttaccttttgat--ttatactaattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAAGCTAGGAGAAAAAATGTTGGTGGTAAGGTACTGGGTTTCTTCTACTAGA
 |  ||| |  |||   | | || |    | |   | |  | ||   |  | | ||| |   | || ||      |  | ||||||  |  | | ||  ||||||||||| || |||||  ||||||| || || |||||||||||||| || || ||||||||||| ||||||||||| || || || ||||||||||||||| 
tattttagctgcatactagtgtattacaggctagatttcctttgccaacaatatatg-tggtttcatttga----tgacctttgatgatggtccaaaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAGGCTAGGAGAAAGAATGTTGGTGGCAAAGTGCTTGGTTTCTTCTACTAGG

upper sequence: GLYMA07G38520.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S41_94V6.2 (Physcomitrella patens), 3'ss of exon 3
-------------------------------------------------------------------------------------agat-taaccattgaactatactgattggttactctgttatgttgaatacaaatggttcctccacttatcccttaccttttgatttatactaattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAAGCTAGGAGAAAAAATGTTGGTGGTAAGGTACTGGGTTTCTTCTACTAGA
                                                                                       || | ||  |||    || ||  |   |  || | ||   | |  || |   |||     |  | || |||||  | |   ||  |  |   | ||||||| || || ||||| ||||| || || || || |||||||||||||| ||||||||||| |||||||| || || |||||  |||| ||||| |||||| 
gttattatttaccacctgtcatcgtggtctactcaatattattcaaaatcggtggtacaatgtggtgctgtggagatagcttaacgcatgtgacggttgcgtcatcctagtacttctctttttttcttcgtttagagtcggtggaatc-ttcattccttatatgtattttatttttgcctgtgcagTTCGGATACATTGTTTTGACCACTTCGGCTGGAATCATGGATCACGACGAAGCTAGGAGGAAAAATGTCGGAGGCAAGGTTTTGGGATTCTTTTACTAGT

upper sequence: GLYMA07G38520.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S61_209V6.1 (Physcomitrella patens), 3'ss of exon 2
agattaaccattgaactatactgattggttactctgttatgttga-atacaaatggttcctccacttatcccttaccttttgatttata-ctaattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAAGCTAGGAGAAAAAATGTTGGTGGTAAGGTACTGGGTTTCTTCTACTAGA
  ||  | | |     | || ||   || |     ||  | |  |  ||||| |   ||      ||   || |  | |||  | | |  |   || |||||||||| || ||||||||||| ||||| || || || ||||||||||| || |||||| | || || || || || |||||  | || |||||||| ||  
-catgtaacttacccttctagtg-caggatttcgagtagtataaacgtacaagtaaatcagaatgttcgaccatgtcatttactgtttgtcctgttgtgcagTTTGGCTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAGGCTAGGCGTAAGAACGTAGGAGGAAAGGTCTTAGGATTCTTCTATTAAG

upper sequence: GLYMA07G38520.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S1_304V6.1 (Physcomitrella patens), 3'ss of exon 2
--agattaaccattgaactatactgattggttactctgttat-gttgaatacaaatggttcctccacttatcccttaccttttga--tttatactaattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAAGCTAGGAGAAAAAATGTTGGTGGTAAGGTACTGGGTTTCTTCTACTAGA
   ||| || | || | |       |  || |    |||||  | ||  |  |  |      |  || |      |   | ||||  |||  |    ||||||||||||| || ||||| ||||| ||||| || ||||||||||| ||||| || ||||| || || |||||||| || ||||| || |||||||| ||||   
aacgatcaagcgttaatcctcctcaagaggatttcatgttaccgctgcttttaggta-----tgaacctgaaatctgattgttgagtttttcatcttttttgcagTTTGGATACATTGTTTTGACCACCTCAGCTGGCATCATGGACCACGACGAGGCTAGAAGGAAGAATGTTGGAGGAAAGGTCCTTGGTTTCTTTTACTGAG

upper sequence: GLYMA07G38520.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ14550 (Selaginella moellendorffii), 3'ss of exon 2
agattaaccattgaactatactgattggttactctgttatgttgaatacaaatggttcctccacttatcccttaccttttgatttatactaattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAAGCTAGGAGAAAAAATGTTGGTGGTAAGGTACTGGGTTTCTTCTACTAGA
            |    ||  |||  |   | ||  |   | |   | ||||          | | |    || |  || ||| |   ||   |   |||||||| || |||||  |||| || ||  |||| |||||||||||||| ||||| ||||| || ||||||||||| ||||| || || |||||||| |   
------------gtttgattttgagagacgaatcgatg--gcttggtgcaaaga--------agtaacgattttctcttcgatct---ctggct---cagTTTGGTTACATTGTGCTGACAACATCGTCCGGTATCATGGATCACGACGAAGCGAGGAGGAAGAATGTTGGTGGCAAGGTCCTCGGCTTCTTCTATTGAT

upper sequence: GLYMA07G38520.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ26253 (Selaginella moellendorffii), 3'ss of exon 2
agattaaccattgaactatactgattggttactctgttatgttgaatacaaatggttcctccacttatcccttaccttttgatttatactaattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAAGCTAGGAGAAAAAATGTTGGTGGTAAGGTACTGGGTTTCTTCTACTAGA
            |    ||  |||  |   | ||  |   | |   | ||||          ||| |    || |  || ||| |   ||   |   |||||||| || |||||  |||| || ||  | || |||||||||||||| ||||| ||||| || ||||||||||| ||||| || || |||||||| |   
------------gtttgattttgagagacgaatcgatg--gcttggtgcaaaga--------actaacgattttctcttcgatct---ctggct---cagTTTGGCTACATTGTGCTGACAACATCGTCTGGTATCATGGATCACGACGAAGCGAGGAGGAAGAATGTTGGTGGCAAGGTCCTCGGCTTCTTCTATTGAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6133914|gb|AW132307.1|AW132307
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|208058132|gb|GD860193.1|GD860193
EST:     ACTGCTAGGCTTCTCCCCTCAAGACAG                         T
genomic: ACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcag-
EST: gi|208058132|gb|GD860193.1|GD860193
EST:     ACTGCTAGGCTTCTCCCCTCAAGACAG                         T
genomic: ACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcag-
EST: gi|193559153|gb|FK515912.1|FK515912
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|298184105|gb|HO029318.1|HO029318
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|298166619|gb|HO010058.1|HO010058
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|193316555|gb|FK279443.1|FK279443
EST:     CTGCTAGGCTTCT-CCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: CTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|298196981|gb|HO041748.1|HO041748
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|16284410|gb|BI946072.1|BI946072
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|19268708|gb|BM884964.1|BM884964
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|193684845|gb|FK624763.1|FK624763
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|16280654|gb|BI944077.1|BI944077
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|193548628|gb|FK509541.1|FK509541
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|207734995|gb|GD712526.1|GD712526
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|208128863|gb|GD932783.1|GD932783
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|192322844|gb|FK014775.1|FK014775
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|298168973|gb|HO020277.1|HO020277
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|298198924|gb|HO042287.1|HO042287
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|16279110|gb|BI943263.1|BI943263
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|16277146|gb|BI942227.1|BI942227
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|208319564|gb|GE114523.1|GE114523
EST:     ACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: ACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|209725800|gb|BW657984.1|BW657984
EST:     GCGTCAGAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|26268251|gb|CA819314.1|CA819314
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|208153778|gb|GD952255.1|GD952255
EST:     TCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: TCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|192301517|gb|FG994757.1|FG994757
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|192323402|gb|FK018993.1|FK018993
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|298170922|gb|HO015898.1|HO015898
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCCTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|16281501|gb|BI944520.1|BI944520
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATC
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATC
EST: gi|16996759|gb|BM086131.1|BM086131
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|31474829|gb|CD416857.1|CD416857
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|298175576|gb|HO018287.1|HO018287
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|15000501|gb|BI321315.1|BI321315
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|15812952|gb|BI785227.1|BI785227
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|16282413|gb|BI945003.1|BI945003
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAA
EST: gi|16278609|gb|BI942992.1|BI942992
EST:     GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAG                         TTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCCACGAAGA
genomic: GCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaa ... aattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATC-ACGAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacaaatggttcctccacttatcccttaccttttgatttatactaattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAAGCTAGGAGAAAAAATGTTGGTGGTAAGGTACTGGGTTTCTTCTACTAGA
                                         tactaat  putative branch site (score: 1)
                               ttttgatttatactaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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agattaaccattgaactatactgattggttactctgttatgttgaatacaaatggttcctccacttatcccttaccttttgatttatactaattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAAGCTAGGAGAAAAAATGTTGGTGGTAAGGTACTGGGTTTCTTCTACTAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - ctgattg
- - - - - - - - - - - - - - - - - tgttatg