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gttaccttgtttgcttattgtttatttaacctttgttgaattgttgaggaagaaaagttgatacctagctataatcatggtttgaaattgttgcaccgtgaaatccagtgatcttataccttacctttgcagGTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCACAGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAGG
species | Glycine max |
transcript | GLYMA07G37640.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGGGTGCATGGTTAAACGATGAG GTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCAEST: gi|207685555|gb|GD667669.1|GD667669
genomic: CCGGGTGCATGGTTAAACGATGAGgttaccttgt ... acctttgcagGTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCA
EST: TTAGACCGGGTGCATGGTTAAATGATGAG GTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCAEST: gi|208055169|gb|GD851156.1|GD851156
genomic: TTAGACCGGGTGCATGGTTAAACGATGAGgttaccttgt ... acctttgcagGTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCA
EST: TGCATGGTTAAACGATGAG GTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCAEST: gi|193459686|gb|FK423893.1|FK423893
genomic: TGCATGGTTAAACGATGAGgttaccttgt ... acctttgcagGTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCA
EST: CCGGGTGCATGGTTAAACGATGAG GTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCAEST: gi|208298330|gb|GE089723.1|GE089723
genomic: CCGGGTGCATGGTTAAACGATGAGgttaccttgt ... acctttgcagGTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCA
EST: GACCGGGTGCATGGTTAAACGATGAG GTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCAEST: gi|193357955|gb|FK318967.1|FK318967
genomic: GACCGGGTGCATGGTTAAACGATGAGgttaccttgt ... acctttgcagGTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCA
EST: CCGGGTGCATTGGTTTAAACGATGAG GTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCAEST: gi|208107846|gb|GD902022.1|GD902022
genomic: CCGGGTGCAT-GGTT-AAACGATGAGgttaccttgt ... acctttgcagGTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCA
EST: CCGGGTGCATGGTTAAACGATGAG GTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCAEST: gi|193719467|gb|FK651855.1|FK651855
genomic: CCGGGTGCATGGTTAAACGATGAGgttaccttgt ... acctttgcagGTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCA
EST: CCGGGTGCATGGTTAAACGATGAG GTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCAEST: gi|193624423|gb|FK573435.1|FK573435
genomic: CCGGGTGCATGGTTAAACGATGAGgttaccttgt ... acctttgcagGTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCA
EST: TGCATGGTTAAACGATGAG GTAATAAATATGTACCTTGAATTGCTGAAAGAGAGGGAGAEST: gi|193651025|gb|FK597590.1|FK597590
genomic: TGCATGGTTAAACGATGAGgttaccttgt ... acctttgcagGTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGA
EST: TGCATGGTTAAACGATGAG GTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCAEST: gi|193619692|gb|FK570860.1|FK570860
genomic: TGCATGGTTAAACGATGAGgttaccttgt ... acctttgcagGTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCA
EST: CCGGGTGCATGGTTAAACGATGAG GTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCAEST: gi|208178234|gb|GD975779.1|GD975779
genomic: CCGGGTGCATGGTTAAACGATGAGgttaccttgt ... acctttgcagGTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCA
EST: GACCGGGTGCATGGTTAAACGATGAG GTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCAEST: gi|15662185|gb|BI699556.1|BI699556
genomic: GACCGGGTGCATGGTTAAACGATGAGgttaccttgt ... acctttgcagGTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCA
EST: CGGGAGAAAAGTTTCAATGCCTTAGACCGGGTGCATGGTTAAACGATGAG GTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCA
genomic: CGGGAGAAAAGTTTCAATGCCTTAGACCGGGTGCATGGTTAAACGATGAGgttaccttgt ... acctttgcagGTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCA
tggtttgaaattgttgcaccgtgaaatccagtgatcttataccttacctttgcagGTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCACAGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAGG
accttac putative branch site (score: 3)
ccttaccttt CT-rich tract
aaattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaccttgtttgcttattgtttatttaacctttgttgaattgttgaggaagaaaagttgatacctagctataatcatggtttgaaattgttgcaccgtgaaatccagtgatcttataccttacctttgcagGTAATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAGAAGAGAGCCACAGAAGTTTCTGAACTGTCATTTTTTCAGTACCTTTTTCTACAAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG