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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttagggaattgagctatttgtttattagtcaagctataatgaaaaggcaaaaagaaaattttgacattttggttactgctttatttatcaatctgtgcagGGTCCTCAAAAGGTGAAAGTTGGCTCCTCAGACAAAATAGTAACTGCAAAAGATATCATCATTGCTACTGGTTCTGTTCCATTTGTTCCTAAGGGCATTG

Basic information

species Glycine max
transcript GLYMA07G37050.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G37050.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g06460.1 (Oryza sativa), 3'ss of exon 3
----ttagggaattgagctatttgtttattagtcaagctataatgaaaaggcaaaaagaaaatt-ttgacatt--ttggttactgctttattt--atcaatctgtgcagGGTCCTCAAAAGGTGAAAGTTGGCTCCTCAGACAAAATAGTAACTGCAAAAGATATCATCATTGCTACTGGTTCTGTTCCATTTGTTCCTAAGGGCATTG
    ||  || |   |     |     | ||    | ||   |   |      || |||  |||   ||||||  |   || ||    |  ||  ||||       ||       |   | |  |||||||| |   ||||||||  | | |||||||   ||||||||||||||||||| || ||||| |||||||| |         
tatcttgtggtagaaaatgcatacaggaatatctcatctgcgaaatatgacataatagaggattgccgacattaatctattcctatcatgatttgatcagGGAAAACAAAAGGTACGGTATGGAAAAGTTGGTTTTCCAGACAAAGAAATCACTGCAAGGAATATCATCATTGCTACTGGATCAGTTCCTTTTGTTCCCA---------

upper sequence: GLYMA07G37050.2 (Glycine max), 3'ss of exon 3
lower sequence: AT3G16950.1 (Arabidopsis thaliana), 3'ss of exon 3
--------ttagggaattgagctatttgtttattagt-caagctataatgaaaaggcaaaaagaaaatttt----gac----attttggttactgctttatttatcaatctgtgcagGGTCCTCAAAAGGTGAAAGTTGGCTCCTCAGACAAAATAGTAACTGCAAAAGATATCATCATTGCTACTGGTTCTGTTCCATTTGTTCCTAAGGGCATTG---
        | ||      |  |||||  || |    | | | || ||   |  |     | | ||| ||||     ||    ||  |   |  |       || |  || | |||||||||| |||||||| |||  |||       ||||| ||  | |||||||||||||| |||||||| ||||| ||||| || ||||| ||||| || ||||   
gtcagtactcagtagtacgttctattctttcacgtttactaactgtagacaggaacatgatacaaacttttcttaaacgatgatcctaactcatatcaatattttgtatttctgcagGGTCCACAAAAGGTTAAATATGGGA---AGGACAATATTATTACTGCAAAAGATATAATCATTGCCACTGGATCTGTGCCGTTTGTCCCTAAAGGAATTGAAG

upper sequence: GLYMA07G37050.2 (Glycine max), 3'ss of exon 3
lower sequence: EFJ06739 (Selaginella moellendorffii), 3'ss of exon 3
ttagggaattgagctatttgtttattagtcaagctataatgaaaaggcaaaaagaaaattttgacattttggttactgctttatttatcaatctgtgcagGGTCCTCAAAAGGTGAAAGTTGGCTCCTCAGACAAAATAGTAACTGCAAAAGATATCATCATTGCTACTGGTTCTGTTCCATTTGTTCCTAAGGGCATTG
                        | |||    || |  |       |  ||      | ||  ||   || ||     | ||     ||  |    ||           | |  ||  | ||||     |||||| |  | || || |||||||||||||| ||||| || || ||||||||||||||           
-----------------------gtcagtatctctgtgttcttgtctcgtaag---tgtcttctcacaatgcttgtgtttcta-----cagGCACCTCAAAAAGTGAGGTATGGCAAGATCGGCTATGTTGACAAAGTTATCACAGCCAAAGATATCATCATCGCTACCGGATCAGTTCCATTTGTTCCAC---------

upper sequence: GLYMA07G37050.2 (Glycine max), 3'ss of exon 3
lower sequence: EFJ16882 (Selaginella moellendorffii), 3'ss of exon 3
ttagggaattgagctatttgtttattagtcaagctataatgaaaaggcaaaaagaaaattttg-acattttggttactgctttatttatcaatctgtgcagGGTCCTCAAAAGGTGA---------AAGTTGGCTCCTCAGACAAAATAGTAACTGCAAAAGATATCATCATTGCTACTGGTTCTGTTCCATTTGTTCCTAAGGGCATTG
                                              | |     ||   || | |  ||  ||||    |  |  || |   | | | ||||  |||||||| ||||         |  | ||||     |||||| |  | || || |||||||||||||| ||||| || || ||||||||||||||           
------------------------------------------gtcagtatcttcaactcttcgtatcttaaggttctcacaatgcttgt--gtttctacagGCACCTCAAAAAGTGAGGTATGGCAAGATCGGCTATGTTGACAAAGTTATCACAGCCAAAGATATCATCATCGCTACCGGATCAGTTCCATTTGTTCCAC---------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcaaaaagaaaattttgacattttggttactgctttatttatcaatctgtgcagGGTCCTCAAAAGGTGAAAGTTGGCTCCTCAGACAAAATAGTAACTGCAAAAGATATCATCATTGCTACTGGTTCTGTTCCATTTGTTCCTAAGGGCATTG
             ttttgac  putative branch site (score: 3)
         aaaattttgacatttt  TA-rich tract