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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccgtttttcctttctttttttatgccattttcttctgttttgattggacatagcactttttaaagtttaccacaacttgcagACTGAATTTGGAAGGGAGGTACCTTTGTTTGAAGTTGAGGCAACAGCTGTGGAGCCAGTATTTCAAAGGCTGTACTCCTACATATTTGACACGGACAGTG

Basic information

species Glycine max
transcript GLYMA07G36730.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G36730.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0077g00250.t01 (Vitis vinifera), 3'ss of exon 3
-------------------gtaaccgtttttcctttctttttttatgcc--attttcttctgttttgattggacatagcact---ttttaaagttta-ccacaacttgcagACTGAATTTGGAAGGGAGGTACCTTTGTTTGAAGTTGAGGCAACAGCTGTGGAGCCAGTATTTCAAAGGCTGTACTCCTACATATTTGACACGGACAGTG
                     ||   ||  | || ||||  ||  |||   |     ||| | | | ||| | | |   |     || |||| | ||   |||||||  || |||| | |||||||||||| || |||||||| || || ||||||||||||||| | |||||||| |  || || |||||||||||||||| ||| | | 
gttactgtcattgtttctttcaattattactgctgtcttgattattgctgaaaaagtttcagatatcatttggcttcaaatgaagttctaaaatctagttacaacttttagTCTGATTATGGAAGGGAGGTGCCGTTGTTTGAGGTGGATGCAACAGCTGTGGAGTCTGTATTTCAGAAACTATATTCCTACATATTTGACATGGATAATA

upper sequence: GLYMA07G36730.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0077g00200.t01 (Vitis vinifera), 3'ss of exon 2
-------------------gtaaccgtttttcctttctttttttatgc--cattttcttctgttttgattggacatagcact---ttttaaagttta-ccacaacttgcagACTGAATTTGGAAGGGAGGTACCTTTGTTTGAAGTTGAGGCAACAGCTGTGGAGCCAGTATTTCAAAGGCTGTACTCCTACATATTTGACACGGACAGTG
                     ||   ||  | || ||||  ||  |||  ||     | | | | | ||| | | |   |     || |||| |  |   |||||||  || |||| | |||||||||||| || |||||||| || || ||||||||||||||||| |||||||| |  || || |||||||||||||||| ||| | | 
gttactgtcattgtttctttcaattattactgctgtcttgattattgctgcaaaagttacagatatcatttggcttcaaatgaagttctaaaatccagttacaacttttagTCTGATTATGGAAGGGAGGTGCCGTTGTTTGAGGTGGATGCAACAGCTGTGGAGCCTGTATTTCAGAAACTATATTCCTACATATTTGACATGGATAATA

upper sequence: GLYMA07G36730.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0077g00820.t01 (Vitis vinifera), 3'ss of exon 3
---gtaaccgtttttcctttcttttttta-tgccattttcttctgttttga-----ttggacatagcactt---------------tttaaagttta-ccacaacttgcagACTGAATTTGGAAGGGAGGTACCTTTGTTTGAAGTTGAGGCAACAGCTGTGGAGCCAGTATTTCAAAGGCTGTACTCCTACATATTTGACACGGACAGTG
        | || || |||||  || ||| |||  | ||  |   |  |||     ||  | ||| || ||               | |||| | ||   |||||||  || |||| | |||||||||||| || |||||||  || || ||||||||||||||||| |||||||| |  || || |||||||||||||||| ||| | | 
gttactgtcattgtttctttcaattattactgctgtcttgattattgctgaaaaagttacagatatcatttggcttcaaatgaagttctaaaatctagttacaacttttagTCTGATTATGGAAGGGAGGTGCCGTTGTTTGGGGTGGATGCAACAGCTGTGGAGCCTGTATTTCAGAAACTATATTCCTACATATTTGACATGGATAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcttctgttttgattggacatagcactttttaaagtttaccacaacttgcagACTGAATTTGGAAGGGAGGTACCTTTGTTTGAAGTTGAGGCAACAGCTGTGGAGCCAGTATTTCAAAGGCTGTACTCCTACATATTTGACACGGACAGTG
          ttttgat  putative branch site (score: 4)
                           actttttaaagttta  TA-rich tract