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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtgtatgatatctctcatttcagcaaagaactgcttcatacatatataatttcttgtgtttatctatatttggtgttgttgtttgatgttcaaactattgttatcattagGCTGCTTTAGCTACTGCAAGCACAGATCTTCCATCAACACATCCAATCCGTCTTGGACTTGCACTCAACTTCTCAGTCTTCTATTATGAGATACTGAACT

Basic information

species Glycine max
transcript GLYMA07G35240.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G35240.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0011g00620.t01 (Vitis vinifera), 3'ss of exon 3
gttggtgtatgatatctctcatttca-gcaaagaactgct--tcatacatatataatttcttgtgtttatctatatttggtgttgttgtttgatgttcaaactattgttatcattagGCTGCTTTAGCTACTGCAAGCACAGATCTTCCATCAACACATCCAATCCGTCTTGGACTTGCACTCAACTTCTCAGTCTTCTATTATGAGATACTGAACT
         ||| |||||| |    |  || |||     |  || ||  ||| |||  | || |  ||   |  | ||| | |     ||   ||      ||||     |  ||||||||| |     ||||| | ||| || || || ||||| || |||||||||||||| ||||| ||||||||||| |||||||| ||||||||| |||| |
--------gtgacatctcttaacaaacacatagagtcaatgttcgtatttatgtaacattttctaattcgat-cacttgatataccctttctttg------ctat-----ttgttagGCTGCCTCCAGCACTGCTAACACTGACCTCCCTTCAACCCACCCAATCCGTCTTGGCCTTGCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATT

upper sequence: GLYMA07G35240.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ35972 (Selaginella moellendorffii), 3'ss of exon 3
gttggtgtatgatatctctcatttcagcaaagaactgcttcatacatatataatttcttgtgtttatctatatttggtgttgttgtttgatgttcaaactat-tgttatcattagGCTGCTTTAGCTACTGCAAGCACAGATCTTCCATCAACACATCCAATCCGTCTTGGACTTGCACTCAACTTCTCAGTCTTCTATTATGAGATACTGAACT
                                          ||       || |   | ||  |    ||  ||| | | |||  |  | |||     | |  ||| |  | |||| ||    | ||||||    || ||||| ||  | || |||||||| || ||||| || ||||| ||||||||||| ||||| || |||||||| ||||
-----------------------------------------gtaagctcgcaaatctctttgcgtg---atcgttgttttggtttctataagttttgggtgtgcgttgtt-tcagGCCGCCACTGATACTGCTTCGACCGATCTGCCTCCTACGCATCCAATTCGGCTTGGGCTGGCACTGAACTTCTCAGTTTTCTACTACGAGATACTCAACT

upper sequence: GLYMA07G35240.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ36243 (Selaginella moellendorffii), 3'ss of exon 3
gttggtgtatgatatctctcatttcagcaaagaactgcttcatacatatataatttcttgtgtttatctatatttggtgttgttgtttgatgttcaaactat-tgttatcattagGCTGCTTTAGCTACTGCAAGCACAGATCTTCCATCAACACATCCAATCCGTCTTGGACTTGCACTCAACTTCTCAGTCTTCTATTATGAGATACTGAACT
                                          ||       || |   | ||  |    ||  ||| | | |||  |  | |||     | |  ||| |  | |||| ||    | ||||||    || ||||| ||  | || |||||||| || ||||| || ||||| ||||||||||| ||||| || |||||||| ||||
-----------------------------------------gtaagctcgcaaatctctttgcgtg---atcgttgttttggtttctataagttttgggtgtgcgttgtt-tcagGCCGCCACTGATACTGCTTCGACCGATCTGCCTCCTACGCATCCAATTCGGCTTGGGCTGGCACTAAACTTCTCAGTTTTCTACTACGAGATACTCAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtttatctatatttggtgttgttgtttgatgttcaaactattgttatcattagGCTGCTTTAGCTACTGCAAGCACAGATCTTCCATCAACACATCCAATCCGTCTTGGACTTGCACTCAACTTCTCAGTCTTCTATTATGAGATACTGAACT
                         gtttgat  putative branch site (score: 5)
                                        tattgttatcatta  TA-rich tract