1 5' 3' | 2 5' 3' | 3 5' 3' |
...gatttaaaagtattttgaaaaaagtgtgttgctatcatatctttgtatttacctgtttctggtcacttattctgtctgttacttcaaatgtatgtggcagGTTGAAAACCAAGAAGGGGTTGCAAATTTTGATGAAATCCTTGCAAATTCAGATGCATTTATGGTGGCACGTGGTGACCTTGGAATGGAAATTCCAATAG
species | Glycine max |
transcript | GLYMA07G35110.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCAGGAAAGTTCTGGGAAAACATGCCAAGAACATTATGCTCATGTCTAAG GTTGAAAACCAAGAAGGGGTTGCAAATTTTGATGAAATCCTTGCAAATTCAEST: gi|254346381|gb|GR856103.1|GR856103
genomic: TCAGGAAAGTTCTGGGAAAACATGCCAAGAACATTATGCTCATGTCTAAGgtatgtcgtg ... tatgtggcagGTTGAAAACCAAGAAGGGGTTGCAAATTTTGATGAAATCCTTGCAAATTCA
EST: TCAGGAAAGTTCTGGGAAAACATGCCAAGAACATTATGCTCATGTCTAAG GTTGAAAACCAAGAAGGGGTTGCAAATTTTGATGAAATCCTTGCAAATTCAEST: gi|9899425|gb|BE608393.1|BE608393
genomic: TCAGGAAAGTTCTGGGAAAACATGCCAAGAACATTATGCTCATGTCTAAGgtatgtcgtg ... tatgtggcagGTTGAAAACCAAGAAGGGGTTGCAAATTTTGATGAAATCCTTGCAAATTCA
EST: TCAGGAAAGTTCTGGGAAAACATGCCAAGAACATTATGCTCATGTCTAAG GTTGAAAACCAAGAAGGGGTTGCAAATTTTGATGAAATCCTTGCAAATTCAEST: gi|7924312|gb|AW830338.1|AW830338
genomic: TCAGGAAAGTTCTGGGAAAACATGCCAAGAACATTATGCTCATGTCTAAGgtatgtcgtg ... tatgtggcagGTTGAAAACCAAGAAGGGGTTGCAAATTTTGATGAAATCCTTGCAAATTCA
EST: TCAGGAAAGTTCTGGGAAAACATGCTAAGAACATTATGCTCATGTCTAAG GTTGAAAACCAAGAAGGGGTTGCAAATTTTGATGAAATCCTTGCAAATTCA
genomic: TCAGGAAAGTTCTGGGAAAACATGCCAAGAACATTATGCTCATGTCTAAGgtatgtcgtg ... tatgtggcagGTTGAAAACCAAGAAGGGGTTGCAAATTTTGATGAAATCCTTGCAAATTCA
tatttacctgtttctggtcacttattctgtctgttacttcaaatgtatgtggcagGTTGAAAACCAAGAAGGGGTTGCAAATTTTGATGAAATCCTTGCAAATTCAGATGCATTTATGGTGGCACGTGGTGACCTTGGAATGGAAATTCCAATAG
aaatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatttaaaagtattttgaaaaaagtgtgttgctatcatatctttgtatttacctgtttctggtcacttattctgtctgttacttcaaatgtatgtggcagGTTGAAAACCAAGAAGGGGTTGCAAATTTTGATGAAATCCTTGCAAATTCAGATGCATTTATGGTGGCACGTGGTGACCTTGGAATGGAAATTCCAATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - gaaaaaa
- - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgtc