1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tatctgtcaatctgtaagtttatttggaagggcatgataataaaattacacctttgtttggttcatttgtctaattaaacttctgtgctgttaattgcagCAGCTACACCAAAGCAAATTAGAGAGCTTATGCAGGTTGATGGCCTAACTAACGATGAAGTGAAGAGCCATTTACAA
species | Glycine max |
transcript | GLYMA07G33130.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTGCACAGACGATTCGTTAATGCCTTGCAGAAGCTTGGAGGTACTCAAG CAGCTACACCAAAGCAAATTAGAGAGCTTATGCAGGTTGATGGCCTAACTAEST: gi|4396409|gb|AI495406.1|AI495406
genomic: GTTGCACAGACGATTCGTTAATGCCTTGCAGAAGCTTGGAGGTTCTCAAGgttagaaatt ... ttaattgcagCAGCTACACCAAAGCAAATTAGAGAGCTTATGCAGGTTGATGGCCTAACTA
EST: GTTGCACAGACGATTCGTTAATGCCTTGCAGAAGCTTGGAGGTTCTCAAG CAGCTACACCAAAGCAAATTAGAGAGCTTATGCAGGTTGATGGCCTAACTAEST: gi|254331378|gb|GR843390.1|GR843390
genomic: GTTGCACAGACGATTCGTTAATGCCTTGCAGAAGCTTGGAGGTTCTCAAGgttagaaatt ... ttaattgcagCAGCTACACCAAAGCAAATTAGAGAGCTTATGCAGGTTGATGGCCTAACTA
EST: GTTGCACAGACGATTCGTTAATGCCTTGCAGAAGCTTGGAGGTTCTCAAG CAGCTACACCAAAGCAAATTAGAGAGCTTATGCAGGTTGATGGCCTAACTAEST: gi|51341836|gb|CO983153.1|CO983153
genomic: GTTGCACAGACGATTCGTTAATGCCTTGCAGAAGCTTGGAGGTTCTCAAGgttagaaatt ... ttaattgcagCAGCTACACCAAAGCAAATTAGAGAGCTTATGCAGGTTGATGGCCTAACTA
EST: GTTGCACAGACGATTCGTTAATGCCTTGCAGAAGCTTGGAGGTTCTCAAG CAGCTACACCAAAGCAAATTAGAGAGCTTATGCAGGTTGATGGCCTAACTA
genomic: GTTGCACAGACGATTCGTTAATGCCTTGCAGAAGCTTGGAGGTTCTCAAGgttagaaatt ... ttaattgcagCAGCTACACCAAAGCAAATTAGAGAGCTTATGCAGGTTGATGGCCTAACTA
ttacacctttgtttggttcatttgtctaattaaacttctgtgctgttaattgcagCAGCTACACCAAAGCAAATTAGAGAGCTTATGCAGGTTGATGGCCTAACTAACGATGAAGTGAAGAGCCATTTACAA
tgttaat putative branch site (score: 3)
atttgtctaattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatctgtcaatctgtaagtttatttggaagggcatgataataaaattacacctttgtttggttcatttgtctaattaaacttctgtgctgttaattgcagCAGCTACACCAAAGCAAATTAGAGAGCTTATGCAGGTTGATGGCCTAACTAACGATGAAGTGAAGAGCCATTTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- tctgtca
- - - - - -ctgtaag
- - - - - - - - - - - - tggaagg
- - - - - - - - - - - - - - - -gcatgat
- - - - - - - - - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgtgc