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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttatcttttgcattcattcatttgtgtaatgctgctgtatatgccttttatgtctgttttttgttttatgctgcagGCGCGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTATTGTCATGCAATG

Basic information

species Glycine max
transcript GLYMA07G33120.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G33120.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G081915_T01 (Zea mays), 3'ss of exon 2
--------------------------------------------gttcttatcttttgcattcatt--catttgtgt-aatgctgctgtatatgccttttatgtctgtt---ttttgttttatgctgcagGCGCGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTATTGTCATGCAATG
                                              |  | |||| |||| | |||   || || |  | | |||||  |   | ||  |    ||||         ||||    | |||||||| ||||| ||||||||||| ||||||||||| ||||| || ||| | |||
gtccgtctttctctcgctatcatcgaccctgcttgcttgctgctcgtgctgtcttgtgcactaattgctatctgcgccactcctgcttcactggactaatcaaactgtcaaagcccctttttcatttcagGCGCGTTTCTTTTTCCAACAACTCATATCAGGGGTCAGCTACTGCCATTCCATG

upper sequence: GLYMA07G33120.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv03s0063g01080.t01 (Vitis vinifera), 3'ss of exon 3
gttcttatcttttgcattcattca--tttgtgtaatgctgct-gtatatgccttttatgtctgttttttgttttatgctgcagGCGCGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTATTGTCATGCAATG
||||||||         |||||    ||| ||| |  || || | |   |  | |    |   || | |   || | |||||||| || |||||||||||||||||| ||||||| || ||||| |||||||| |||
gttcttatgcaacttgctcatttggttttctgttactctcctcgcactcgtttatggcttaccttctctagcttgtactgcagGCACGTTTCTTCTTCCAACAACTTGTATCAGGAGTCAGCTACTGTCATGCGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgtaatgctgctgtatatgccttttatgtctgttttttgttttatgctgcagGCGCGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTATTGTCATGCAATG
                               tctgttttttgtttt  CT-rich tract
                                 tgttttttgttttat  TA-rich tract