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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttatgcaatgatttttagctttaactagaaaccttttcattgcaggattctcagccatgtttatttgcagacttgttaatgttttttgcatttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAGTCTGTTCGTGGTTGCATTGTCAGTCCAGATCTCTCTGTTTTGAACCT

Basic information

species Glycine max
transcript GLYMA07G31840.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G31840.3 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 3'ss of exon 4
-tttatgca-atgatttttagctttaactagaaaccttttcattgcaggattctcagccatgtttatttgcagacttgttaatgttttttgcatttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAGTCTGTTCGTGGTTGCATTGTCAGTCCAGATCTCTCTGTTTTGAACCT
 |  |||   | |||  |||  ||| | | |  |  ||| ||||      | ||      ||||    ||   |  |   |    |||||  | |    |||| || || || |||||||||||||| |||||  |||| ||||| ||||||||||| || ||||||||||||||||| | ||||||||||||| | ||| |
gtagatgtttaagatgcttacatttgaatggttatgttt-cattttgctttgctggcaggtgttctaatgtgaatgttcca----tttttatact--gacagGTACCCCCTGCTTCCGTGGATATGGCAGGCGTGATGGTGAGCGCAGAAGGAAGTCAGTCCGTGGTTGCATTGTCAGCCAAGATCTCTCTGTTATCAACTT

upper sequence: GLYMA07G31840.3 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 4
tttatgcaatgatttttagctttaactagaaaccttttcattgcaggattctcagccatgtttatttgcagacttgttaatgttttttgcatttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAGTCTGTTCGTGGTTGCATTGTCAGTCCAGATCTCTCTGTTTTGAACCT
     | ||  |   |    ||  | ||   || ||   ||      ||||    || || |      | |||    | |||||  ||| ||    ||||| || ||||| |||||||| ||||| |||||  |||| ||||| || ||||||||||| ||||||||||| ||||| |  || || |||||| | ||| |
-----gtaaaaaggctctatttctattattgactttcggat------attcatgcccttgct------ctgaccatattatgttacttgtat---ggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTT

upper sequence: GLYMA07G31840.3 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G054136_T06 (Zea mays), 3'ss of exon 3
tttatgcaatgatttttagctttaactagaaaccttttcattgcaggattctcagc--catgttt-atttgcagacttgtt--aatgttttttg-catttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAGTCTGTTCGTGGTTGCATTGTCAGTCCAGATCTCTCTGTTTTGAACCT
         || |   |||   ||   |||   | | |       | | ||||| |  ||| ||| | |   |  ||| |   ||  ||   |  || ||  | ||| ||||| || |||||||| ||||| ||||| ||||| ||||| || ||||||||||| ||||||||||| || || | ||| || |||||| | ||| |
------ttctgctccataggggtatagagacttcctatgtccagtgtactctcaacaccatcttttactctgattcttatctgaacattcgatatcaattctgtagGCACTCCCTGCTTCCGTGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTGAGCCAAGACCTATCTGTTATCAACTT

upper sequence: GLYMA07G31840.3 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G054136_T01 (Zea mays), 3'ss of exon 4
tttatgcaatgatttttagctttaactagaaaccttttcattgcaggattctcagccatgtttatttgcagacttgttaatgttttttgcatttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAGTCTGTTCGTGGTTGCATTGTCAGTCCAGATCTCTCTGTTTTGAACCT
    |  |  || ||    || |  | ||    || |  |   ||   ||  |    ||  |||| || | | | | ||    || |         | ||| ||||| || |||||||| ||||| ||||| ||||| ||||| || ||||||||||| ||||||||||| || || | ||| || |||||| | ||| |
---gtatagagacttc---ctatgtccagtgtactctcaacaccatcttttactctgattcttatctgaacattcgatatcaattct---------gtagGCACTCCCTGCTTCCGTGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTGAGCCAAGACCTATCTGTTATCAACTT

upper sequence: GLYMA07G31840.3 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G054136_T02 (Zea mays), 3'ss of exon 3
tttatgcaatgatttttagctttaactagaaaccttttcattgcaggattctcagccatgtttatttgcagacttgttaatgttttttgcatttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAGTCTGTTCGTGGTTGCATTGTCAGTCCAGATCTCTCTGTTTTGAACCT
    |  |  || ||     ||  | |  |     | |||  |||  ||  |   |  || || ||  | ||    |  || |      || ||  | ||| ||||| || |||||||| ||||| ||||| ||||| ||||| || ||||||||||| ||||||||||| || || | ||| || |||||| | ||| |
---gtatagagacttcctatttacagtgta----ctctca--gcaccatcttttactctgattcttatctgaacattcgatat------caattctgtagGGACTCCCTGCTTCCGTGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTGAGCCAAGACCTATCTGTTATCAACTT

upper sequence: GLYMA07G31840.3 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM5G851698_T01 (Zea mays), 3'ss of exon 4
tttatgcaatgatttttagctttaactagaaaccttttcattgcaggattctcagccatgtttatttgcagacttgttaatgttttttgcatttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAGTCTGTTCGTGGTTGCATTGTCAGTCCAGATCTCTCTGTTTTGAACCT-----------------------------------------------------------------------
                                                              ||| || | | ||| || ||        | ||| | ||| ||||| || ||||| || ||||| ||||| ||||| ||||| || ||||||||||| |||||||| ||||| || | ||| || |||||| | ||| |                                                                       
--------------------------------------------------------------tatctgaacatttgata-tg--------aattgtgtaggcactccctgcttccgcggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgtggttgtattGTGAGCCAAGACCTATCTGTTATCAACTTGGTAATTGTTAAGAAGGGTGAGAACGATCTGCCTGGTTTAACTGACACTGAGAAGCCAAGGATGAGGGGTC

upper sequence: GLYMA07G31840.3 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 4
-tttatgcaatg-atttttagctttaactagaaaccttttcattgcaggattctcagccatgtttatttgcagacttgttaatgttttttgcatttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAGTCTGTTCGTGGTTGCATTGTCAGTCCAGATCTCTCTGTTTTGAACCT
 | |||  | || || |  |   |   ||  | |||   || ||       |  | |   |  |||| || | | ||| || ||        | ||| | ||| ||||| || ||||| || ||||| ||||| ||||| ||||| || ||||||||||| |||||||| ||||| || | ||| || |||||| | ||| |
gtatatagactgtatctccattgtactctcaacaccccctcttt-------tacctgtggttcttatctgaacatttgata-tg--------aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGTATTGTGAGCCAAGACCTATCTGTTATCAACTT

upper sequence: GLYMA07G31840.3 (Glycine max), 3'ss of exon 3
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 4
-----tttatgcaatgatttttagctttaactagaaaccttttcattgcaggattctcagccatgtttatttgcagacttgttaatgtt-ttttgcatt---tgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAGTCTGTTCGTGGTTGCATTGTCAGTCCAGATCTCTCTGTTTTGAACCT
     |  |   |||   ||||         | | | |  |         | |||        ||| | |||         ||||  || ||| | | |   ||| ||||||||||||| ||| | ||| |||||||| | | ||| ||| | ||||| ||||||||||||||||||||||| || || |||||||||||| |||||||
gtaactaaacataataccttttcttacacttttgcatctataatggatttgtatttgtgtgtgtgtgtgttttgctgtagattaacattgtttcgtaatgggtgaacagGAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAAAGTCTGTTCGTGGTTGCATTGTGAGCCCTGATCTCTCTGTTCTGAACCT

upper sequence: GLYMA07G31840.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------------------------------------------tttatgcaatgatttttagctttaactagaaaccttttcattgcaggattctcagccat--gtttatttgcagacttgtt-aatgttt-----------------tttgcattt-----gagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAGTCTGTTCGTGGTTGCATTGTCAGTCCAGATCTCTCTGTTTTGAACCT
                                                           |||||  | || ||||    ||||  | |  |  || || |   || ||| |     ||  || |  ||    | ||| |  ||| ||                 || ||||||     || |||| || ||||| ||||||||||||||||| || ||||||||||| || |||||| |||||||||| |||||||| || |  || ||||| ||||||||| |
gttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatattg-ttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattttgcttgaacagGCACCCCTTGCTTCCGTGGATATGGAAGACGTAATGGAGAGCGAAGGAGGAAGGCTGTTCGTGGATGCATTGTTAGCCAGGACCTCTCAGTTTTGAACTT

upper sequence: GLYMA07G31840.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 4
-----ttta-tgcaatgatttttagctttaa---ctagaaac--cttttcattgcaggattctcagccatgtttatttgcagacttgttaatgttttttgc--atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAGTCTGTTCGTGGTTGCATTGTCAGTCCAGATCTCTCTGTTTTGAACCT
     |  | ||  |   || | | | ||||   ||    ||  |  || | | ||   || |  || |  |   | |      ||  | |   ||| |||  ||||||||||| || || || ||||||||||||||||| || ||||||||||| || |||||| |||||||||| ||||||||||| | ||| ||||||||||||||| |
gtgagtaaactgggactgttctaatccttaaaaactgatcacaacccttaagttcatatttttatgcaagttgggtctatgagatttattacactttatgcttatttgagcagGTACCCCATGCTTCCGTGGATATGGAAGACGTAATGGAGAGCGAAGGAGGAAGGCTGTTCGTGGGTGCATTGTCAGCCAAGACCTCTCTGTTTTGAACTT

upper sequence: GLYMA07G31840.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 4
---------------------------------------------------tttatgcaatgatttttagctttaactagaaacct-tttcattg----caggattctcagccatgtt-tatttgcagacttgttaatgtttt--ttgcatttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAGTCTGTTCGTGGTTGCATTGTCAGTCCAGATCTCTCTGTTTTGAACCT
                                                     | |   |||  |    ||   |  ||||| | | |||   |     || | ||    ||| |||  ||  ||  |  |    | |||| |  ||    || ||||||||| ||||| || || |||||||| ||||| ||||||||| | || |||||| |||| ||||| ||||||||||| |  || || |||||| ||||| |
gtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggcc--agttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGAAGGCTGTACGTGGGTGCATTGTCAGCCAGGACCTTTCTGTTCTGAACTT

upper sequence: GLYMA07G31840.3 (Glycine max), 3'ss of exon 3
lower sequence: EFJ14726 (Selaginella moellendorffii), 3'ss of exon 3
tttatgcaatgatttttagctttaactagaaaccttttcattgcaggattctcagccatgtttatttgcagacttgttaatgttttttgcatt-tgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAGTCTGTTCGTGGTTGCATTGTCAGTCCAGATCTCTCTGTTTTGAACCT
                                        |   | ||| ||      |  || | | |    ||  |  || |||  |  |  ||| ||||     |||| || ||||| |||||  | ||| |||| ||||| || |||||||| |||||||||||||||||||| |  ||||| |||||| | || ||
---------------------------------------gtaaaacgatgcttcttttttcttttctccctctttcgttctgatttgagattcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGAAGTCAGTTCGTGGTTGCATTGTCAGCCATGATCTGTCTGTTCTCAATCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7684901|gb|AW755549.1|AW755549
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|208239627|gb|GE036697.1|GE036697
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGG
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGG
EST: gi|7692658|gb|AW760759.1|AW760759
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|58015016|gb|CX701758.1|CX701758
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATAT-GAAGGGCGCAATGGAGAGCGTAGAAGG
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAA-GGCGCAATGGAGAGCGTAGAAGG
EST: gi|6916434|gb|AW397964.1|AW397964
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|6718573|gb|AW306220.1|AW306220
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTACAAGGA
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|16344376|gb|BI969971.1|BI969971
EST:     GAAGCAGGGAGTGCTGACCNNNNNTCGTGTTCGACTNNNGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|208284798|gb|GE085612.1|GE085612
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGG
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGG
EST: gi|151395160|gb|EV265031.1|EV265031
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACCCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|193520977|gb|FK482426.1|FK482426
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|193418876|gb|FK385228.1|FK385228
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|15662387|gb|BI699758.1|BI699758
EST:     TGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: TGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|16997201|gb|BM086573.1|BM086573
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|193312731|gb|FK280799.1|FK280799
EST:     CGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: CGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|57574317|gb|CX547292.1|CX547292
EST:     -AGCCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: AAG-CAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|8825892|gb|BE209622.1|BE209622
EST:     GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgtaggaatgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggattctcagccatgtttatttgcagacttgttaatgttttttgcatttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAGTCTGTTCGTGGTTGCATTGTCAGTCCAGATCTCTCTGTTTTGAACCT
                             tgttaat  putative branch site (score: 3)
                            ttgttaatgtttttt  TA-rich tract