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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatatatttatattacctgagtttggatataaatatctgtcaactgcaaatgcctggaaattcacatgtatttttgtttctttttatttatcaaatccagGAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG

Basic information

species Glycine max
transcript GLYMA07G31090.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20812614|gb|BQ297092.1|BQ297092
EST:     AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG                         GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG
EST: gi|192297701|gb|FG989591.1|FG989591
EST:     AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG                         GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG
EST: gi|7146910|gb|AW508832.1|AW508832
EST:     AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG                         GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG
EST: gi|19453024|gb|BM954434.1|BM954434
EST:     AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG                         GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG
EST: gi|9259727|gb|BE347874.1|BE347874
EST:     AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG                         GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG
EST: gi|23057519|gb|BU578193.1|BU578193
EST:     AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG                         GAAGTGAGACGGAAAGAAGAAGCTGCTTCA
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAAAGAAGAAGCTGCTTCA
EST: gi|19934355|gb|BQ079383.1|BQ079383
EST:     AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG                         GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG
EST: gi|42722448|gb|CK768347.1|CK768347
EST:     AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG                         GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG
EST: gi|16996884|gb|BM086256.1|BM086256
EST:     AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG                         GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG
EST: gi|151409246|gb|EV279054.1|EV279054
EST:     AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG                         GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG
EST: gi|254315266|gb|GR830259.1|GR830259
EST:     AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG                         GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG
genomic: AGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAGgtatatgatg ... tcaaatccagGAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaaatgcctggaaattcacatgtatttttgtttctttttatttatcaaatccagGAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG
                         tttttgtttcttttta  CT-rich tract
            aaattcacatgtattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatatatttatattacctgagtttggatataaatatctgtcaactgcaaatgcctggaaattcacatgtatttttgtttctttttatttatcaaatccagGAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - ctgagtt
- - - - - - - - - - - - - - - - - - - - caactgc
- - - - - - - - - - - - - - - - - - - - - - - - aatgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attcaca