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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctttcttttctcttggaaaatgtttgcattttttttataatttaattctgttttctctgcttcttctactttgatagctgatgataatgtgtatgtctattggtctttcttgttggatgttttcagATCTGGTGACCAATGTTTTTGCGACTACTACTCGCGACCATCCGATTCATTTATGGGATGCTACCTCGGGCCAG

Basic information

species Glycine max
transcript GLYMA07G30960.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996753|gb|BM086125.1|BM086125
EST:     AGGAGAGTCTATACATGATTTCTGTTGGTATCCTTACATGTCTTCATCAG                         ATCTGGTGACCAATGTTTTTGCGACTACTACTCGCGACCATCCGATTCATT
genomic: AGGAGAGTCTATACATGATTTCTGTTGGTATCCTTACATGTCTTCATCAGgtctttcttt ... atgttttcagATCTGGTGACCAATGTTTTTGCGACTACTACTCGCGACCATCCGATTCATT
EST: gi|298169078|gb|HO020438.1|HO020438
EST:     AGGAGAGTCTATACATGATTTCTGTTGGTATCCTTACATGTCTTCATCAG                         ATCTGGTGACCAATG
genomic: AGGAGAGTCTATACATGATTTCTGTTGGTATCCTTACATGTCTTCATCAGgtctttcttt ... atgttttcagATCTGGTGACCAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatagctgatgataatgtgtatgtctattggtctttcttgttggatgttttcagATCTGGTGACCAATGTTTTTGCGACTACTACTCGCGACCATCCGATTCATTTATGGGATGCTACCTCGGGCCAG
    agctgat  putative branch site (score: 4)
 tgttttc  putative PPT
 atgataat  TA-rich tract