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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacccttttgcttaatcttcaatgtactacttaattgtacaagttattgaatgaaaaaatgttgacttatgaaatggttatgattaaattaagtatatgttggtgtgtattgtatagGCTGTAGTTGCAGCTGCAATTGGAGCAAAGTTTGGAACTGATGGGAACCCAGGTGATTTGCCAAAGTGGTATGCAATTGTTGTGGTTCTCTTCATTTGCA

Basic information

species Glycine max
transcript GLYMA07G30880.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7924427|gb|AW830453.1|AW830453
EST:     GTAGGAGAGCCCTTTTCCTTGAAGGTGGAGTCCAAATGCTCATTTGCCAG                         GCTGTAGTTGCAGCTGCAATTGGAGCAAAGTTTGGAACTGATGGGAACCCA
genomic: GTAGGAGAGCCCTTTTCCTTGAAGGTGGAGTCCAAATGCTCATTTGCCAGgtaccctttt ... tattgtatagGCTGTAGTTGCAGCTGCAATTGGAGCAAAGTTTGGAACTGATGGGAACCCA
EST: gi|51344369|gb|CO985102.1|CO985102
EST:     GTAGGAGAGCCCTTTTCCTTGAAGGTGGAGTCCAAATGCTCATTTGCCAG                         GCTGTAGTTGCAGCTGCAATTGGAGCAAAGTTTGGAACTGATGGGAACCCA
genomic: GTAGGAGAGCCCTTTTCCTTGAAGGTGGAGTCCAAATGCTCATTTGCCAGgtaccctttt ... tattgtatagGCTGTAGTTGCAGCTGCAATTGGAGCAAAGTTTGGAACTGATGGGAACCCA
EST: gi|207831509|gb|GD801689.1|GD801689
EST:     GTAGGAGAGCCCTTTTCCTTGAAGGTGGAGTCCAAATGCTCATTTGCCAG                         GCTGTAGTTGCAGCTGCAATTGGAGCAAAGTTTGGAACTGATGGGAACCCA
genomic: GTAGGAGAGCCCTTTTCCTTGAAGGTGGAGTCCAAATGCTCATTTGCCAGgtaccctttt ... tattgtatagGCTGTAGTTGCAGCTGCAATTGGAGCAAAGTTTGGAACTGATGGGAACCCA
EST: gi|8284253|gb|BE021812.1|BE021812
EST:     GTAGGAGAGCCCTTTTCCTTGAAGGTGGAGTCCAAATGCTCATTTGCCAG                         GCTGTAGTTGCAGCTGCAATTGGAGCAAAGTGTGGA-CTGATGGGAACCC
genomic: GTAGGAGAGCCCTTTTCCTTGAAGGTGGAGTCCAAATGCTCATTTGCCAGgtaccctttt ... tattgtatagGCTGTAGTTGCAGCTGCAATTGGAGCAAAGTTTGGAACTGATGGGAACCC
EST: gi|37995878|gb|CF807467.1|CF807467
EST:     TGAAGGTGGAGTCCAAATGCTCATTTGCCAG                         GCTGTAGTTGCAGCTGCAATTGGAGCAAAGTTTGGAACTGATGGGAACCCA
genomic: TGAAGGTGGAGTCCAAATGCTCATTTGCCAGgtaccctttt ... tattgtatagGCTGTAGTTGCAGCTGCAATTGGAGCAAAGTTTGGAACTGATGGGAACCCA
EST: gi|193331877|gb|FK299385.1|FK299385
EST:     GTAGGAGAGCCCTTTTCCTTGAAGGTGGAGTCCAAATGCTCATTTGCCAG                         GCTGTAGTTGCAGCTGCAATTGGAGCAAAGTTTGGAACTGATGGGAACCCA
genomic: GTAGGAGAGCCCTTTTCCTTGAAGGTGGAGTCCAAATGCTCATTTGCCAGgtaccctttt ... tattgtatagGCTGTAGTTGCAGCTGCAATTGGAGCAAAGTTTGGAACTGATGGGAACCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgacttatgaaatggttatgattaaattaagtatatgttggtgtgtattgtatagGCTGTAGTTGCAGCTGCAATTGGAGCAAAGTTTGGAACTGATGGGAACCCAGGTGATTTGCCAAAGTGGTATGCAATTGTTGTGGTTCTCTTCATTTGCA
 tgttgac  putative branch site (score: 3)
         aaatggttatgattaa  TA-rich tract