1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...caccctaaatgattgttgattatggttgtgtattcagaaaatccattgaagatgttgatttttttccttggttttttgacttattagttctcatggacagGGCTGCATATAAGGGATTTGCTGACACAATAAGATTGCTTCTATTTAGAGATGCAAGTCAAGGAAGACAAGATAAAGATG
species | Glycine max |
transcript | GLYMA07G30380.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATGCTGATTTTGATGTGCCTGATAATGATGGATGGAGTCCTCTTCATTG GGCTGCATATAAGGGATTTGCTGACACAATAAGATTGCTTCTATTTAGAGAEST: gi|21994353|gb|BQ785881.1|BQ785881
genomic: CATGCTGATTTTGATGTGCCTGATAATGATGGATGGAGTCCTCTTCATTGgtatgccatg ... tcatggacagGGCTGCATATAAGGGATTTGCTGACACAATAAGATTGCTTCTATTTAGAGA
EST: CATGCTGATTTTGATGTGCCTGATAATGATGGATGGAGTCCTCTTCATTG NGCTGCATATAAGGEST: gi|208340852|gb|GE137414.1|GE137414
genomic: CATGCTGATTTTGATGTGCCTGATAATGATGGATGGAGTCCTCTTCATTGgtatgccatg ... tcatggacagGGCTGCATATAAGG
EST: CATGCTGATTTTGATGTGCCTGATAATGATGGAAGGAGTCCTCTTCATTG GGCTGCATATAAGGGATTTGCTGACACAGTAAGATTGCTTCTATTTAGAGAEST: gi|209703909|gb|BW661599.1|BW661599
genomic: CATGCTGATTTTGATGTGCCTGATAATGATGGATGGAGTCCTCTTCATTGgtatgccatg ... tcatggacagGGCTGCATATAAGGGATTTGCTGACACAATAAGATTGCTTCTATTTAGAGA
EST: CATGCTGATTTTGATGTGCCTGATAATGATGGATGGAGTCCTCTTCATTG GGCTGCATATAAGGGATTTGCTGA
genomic: CATGCTGATTTTGATGTGCCTGATAATGATGGATGGAGTCCTCTTCATTGgtatgccatg ... tcatggacagGGCTGCATATAAGGGATTTGCTGA
ttgaagatgttgatttttttccttggttttttgacttattagttctcatggacagGGCTGCATATAAGGGATTTGCTGACACAATAAGATTGCTTCTATTTAGAGATGCAAGTCAAGGAAGACAAGATAAAGATG
ttttgac putative branch site (score: 3)
ttctcat putative PPT
ttttttgacttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caccctaaatgattgttgattatggttgtgtattcagaaaatccattgaagatgttgatttttttccttggttttttgacttattagttctcatggacagGGCTGCATATAAGGGATTTGCTGACACAATAAGATTGCTTCTATTTAGAGATGCAAGTCAAGGAAGACAAGATAAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
cacccta
- - - - - - -tgttgat
- - - - - - - - - - - -ggttgtg
- - - - - - - - - - - - - - - - - - gaaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - gatgttg