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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataggcttatagtgctgtactgttttaaatgtgtgaacgtttttgttaagtttgctgtggtgtttctgtttactgacaagtgtgggggtgtgttgtgttggttgtagTTGGATATCATGGATAGAGGTACTGATGCCCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTTGGTGTTGTGAATCGTAGTCAAG

Basic information

species Glycine max
transcript GLYMA07G30150.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G30150.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G14120.2 (Arabidopsis thaliana), 3'ss of exon 3
gtataggcttatagtgctgtactgttttaaatgtgtgaacgtttttgttaagtttgctgtggtgtttctgt-ttactgacaagtgtgggggtgtgttgtgttggttgtagTTGGATATCATGGATAGAGGTACTGATGCCCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTTGGTGTTGTGAATCGTAGTCAAG
             ||||| |     |    ||  ||   | ||    |||  | || ||      | || | || || || | ||      | | || | |  | |  |||||||||| ||||| |||||||||||||| |||||||   | || ||||||   ||||| || |||||||| || || || ||||| |||||||||||||
-------------gtgctatttctctcctcataagtttgctttagatttagctgtgatggcaaactactctatttctcacgattgctc---tattttctctctgattcagTTGGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAG

upper sequence: GLYMA07G30150.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 3'ss of exon 3
gtataggct-tatagtgctgtactgttttaaatgtgtgaacgtttttgttaagtttgctgtggtgtttctgtttactgacaagtgtgggggtgtgttgtgttggttgt---agTTGGATATCATGGATAGAGGTACTGATGCCCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTTGGTGTTGTGAATCGTAGTCAAG
      ||| ||||      |  | ||||     | |||| |  | ||  |  |||||   | | ||    ||| || |  ||  | ||    |       | ||  |   ||||||| || ||||| |||||||| |||||||| ||| | ||||| |||||||| |||||||| |||||||||||  | ||||||||||||||||||||||
----gtgctatatatcaacttgatttttttgtcttatgaatgcctgtgcaacatttgc-aagcttttatcattttctaatgaggtttggcaaataccccacttgtaatttcagTTGGACATTATGGACAGAGGTACCGATGCCCGCAATTTATTGCTTGGAAAAGTGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctgtggtgtttctgtttactgacaagtgtgggggtgtgttgtgttggttgtagTTGGATATCATGGATAGAGGTACTGATGCCCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTTGGTGTTGTGAATCGTAGTCAAG
                  tactgac  putative branch site (score: 1)