1 5' 3' | 2 5' 3' | 3 5' 3' |
...tctctcagcaacttcttatctccagctgatcttgtctacaatacatgttttttaatcaagaaaacctgctttatttacttgcttttatggacgcatccagGAGTTGGAACGCCGCAGAGAGGAGCTTGAACAACTACTGCTTGCTGATAGAGTTTAAAACATTTTGAGCGTAGCGCTGAAATTAATCTGCAGTGAAGATA
species | Glycine max |
transcript | GLYMA07G30080.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCAACCAAGGATCTGGAG GAGTTGGAACGCCGCAGAGAGGAGCTTGAACAACTACTGCTTGCTGATAGA
genomic: AGCAACCAAGGATCTGGAGgtatgctgct ... acgcatccagGAGTTGGAACGCCGCAGAGAGGAGCTTGAACAACTACTGCTTGCTGATAGA
tgttttttaatcaagaaaacctgctttatttacttgcttttatggacgcatccagGAGTTGGAACGCCGCAGAGAGGAGCTTGAACAACTACTGCTTGCTGATAGAGTTTAAAACATTTTGAGCGTAGCGCTGAAATTAATCTGCAGTGAAGATA
ttttaat putative branch site (score: 3)
tttaatcaagaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctctcagcaacttcttatctccagctgatcttgtctacaatacatgttttttaatcaagaaaacctgctttatttacttgcttttatggacgcatccagGAGTTGGAACGCCGCAGAGAGGAGCTTGAACAACTACTGCTTGCTGATAGAGTTTAAAACATTTTGAGCGTAGCGCTGAAATTAATCTGCAGTGAAGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - caacttc
- - - - - - - - - - - cagctga
- - - - - - - - - - - - - - - - -gtctaca
- - - - - - - - - - - - - - - - - - - - -tacatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacctgc