1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atgcttcactagtatcataaaagatgcgattgtttcttattattcaacaaactttgtgtttaaaggccatgaacctgaatgatgtccttgtgttctgtagGCTCGAGAATTCTGCAACAAATCTTTCAGGATCTCCAAAGCATGATGGGCCAGGAGCTGCAGGTGCTAATGCATCTTCTCTATTAGAG
species | Glycine max |
transcript | GLYMA07G29660.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGAGTGCTTTAGGAAATGCATGGAGAGGGGGCACTGATTTTGTTCAGCG GCTCGAGAATTCTGCAACAAATCTTTCAGGATCTCCAAAGCATGATGGGCCEST: gi|208061845|gb|GD856297.1|GD856297
genomic: TGGAGTGCTTTAGGAAATGCATGGAGAGGGGGCACTGATTTTGTTCAGCGgtataattca ... tgttctgtagGCTCGAGAATTCTGCAACAAATCTTTCAGGATCTCCAAAGCATGATGGGCC
EST: GGAGTGCTTTAGGAAATGCATGGAGAGGGGGGCACTGATTTTGTTCAGCG GCTCGAGAATTCTGCAACAAATCTTTCAGGATCTCCAAAGCATGATGGGCCEST: gi|208215646|gb|GE015540.1|GE015540
genomic: GGAGTGCTTTAGGAAATGCATGGAGA-GGGGGCACTGATTTTGTTCAGCGgtataattca ... tgttctgtagGCTCGAGAATTCTGCAACAAATCTTTCAGGATCTCCAAAGCATGATGGGCC
EST: TGGAGTGCTTTAGGAAATGCATGGAGAGGGGGCACTGATTTTGTTCAGCG GCTCGAGAATTCTGCAACAAATCTTTCAGGATCTCCAAAGCATGATGGGCCEST: gi|23727581|gb|BU761824.1|BU761824
genomic: TGGAGTGCTTTAGGAAATGCATGGAGAGGGGGCACTGATTTTGTTCAGCGgtataattca ... tgttctgtagGCTCGAGAATTCTGCAACAAATCTTTCAGGATCTCCAAAGCATGATGGGCC
EST: TGGAGTGCTTTAGGAAATGCATGGAGAGGGGGCACTGATTTTGTTCAGCG GCTCGAGAATTCTGCAACAAATCTTTCAGGATCTCCAAAGCATGATGGGCC
genomic: TGGAGTGCTTTAGGAAATGCATGGAGAGGGGGCACTGATTTTGTTCAGCGgtataattca ... tgttctgtagGCTCGAGAATTCTGCAACAAATCTTTCAGGATCTCCAAAGCATGATGGGCC
aacaaactttgtgtttaaaggccatgaacctgaatgatgtccttgtgttctgtagGCTCGAGAATTCTGCAACAAATCTTTCAGGATCTCCAAAGCATGATGGGCCAGGAGCTGCAGGTGCTAATGCATCTTCTCTATTAGAG
tccttgt CT-rich tract
tgtttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcttcactagtatcataaaagatgcgattgtttcttattattcaacaaactttgtgtttaaaggccatgaacctgaatgatgtccttgtgttctgtagGCTCGAGAATTCTGCAACAAATCTTTCAGGATCTCCAAAGCATGATGGGCCAGGAGCTGCAGGTGCTAATGCATCTTCTCTATTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- gcttcac
- - - - - - - - - - - - - - - - - - - - - - - - - -ctttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatga