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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttttctattcctttcatgcatttttgttgcagttctgttgcagttactgcttaccattaatgcctattatgttttgttgcagGCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATG

Basic information

species Glycine max
transcript GLYMA07G29500.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G29500.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G081915_T01 (Zea mays), 3'ss of exon 2
---------------------------------------------gttcttttctattcctttcatgcatttttgttgcagttctgttgcagtt-actgctt--accattaatgcctattatgttttgttgcagGCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATG
                                             || || |  | | |  |   ||| | | ||   || | ||| | || |  |||  |   ||  | || |||  ||   |||  || ||||| || ||||| ||||||||||| ||||||||||| |||||||| ||| | |||
gtccgtctttctctcgctatcatcgaccctgcttgcttgctgctcgtgctgtcttgtgcactaattgc-tatctgcgccactcctgcttcactggactaatcaaactgtcaaagcccctt---tttcatttcagGCGCGTTTCTTTTTCCAACAACTCATATCAGGGGTCAGCTACTGCCATTCCATG

upper sequence: GLYMA07G29500.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G171435_T02 (Zea mays), 3'ss of exon 3
gttcttttctattcctttcatgcatttttgttgcagttctgttgcagttactg-cttaccattaatgcctat-tatgttttgttgcagGCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATG
  | | | ||   |  ||  | ||| ||| ||   |        |  ||  |  | |||||    ||| | | ||| | |  || ||||| |||| ||||||||||||||| || ||||| || |||||||| ||| |||||
-gtttgtgcttgccacttggttcatctttcttcttgacacacctcgttttttatcctaccaaatgtgcgtgtatatatatctttccagGCTCGCTACTTCTTCCAACAACTCATTTCAGGAGTAAGCTACTGCCATTCAATG

upper sequence: GLYMA07G29500.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv03s0063g01080.t01 (Vitis vinifera), 3'ss of exon 3
gttcttttctattcctttcatgcatttttgttgcagttctgttgcagttactgcttaccattaatgcctattatgttttgttgcagGCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATG
|||||| |  |      ||||    |||| |   | |    | ||| |    | |||    | |       ||  || |  |||||||||| |||||||||||||||||| ||||||| || |||||||||||||| |||
gttcttatgcaacttgctcatttggttttctgttactctcctcgcactc---gtttatggcttaccttctctagcttgtactgcagGCACGTTTCTTCTTCCAACAACTTGTATCAGGAGTCAGCTACTGTCATGCGATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207843753|gb|GD813924.1|GD813924
EST:     GAGAGTTATTTGAGCGGATATGCAATGCAGGACGGTTTAGTGAAGATGAG                         GCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCA
genomic: GAGAGTTATTTGAGCGGATATGCAATGCAGGACGGTTTAGTGAAGATGAGgttcttttct ... tttgttgcagGCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCA
EST: gi|18038723|gb|BM307017.1|BM307017
EST:     GAGAGTTATTTGAGCGGATATGCAATGCAGGACGGTTTAGTGAAGATGAG                         GCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCA
genomic: GAGAGTTATTTGAGCGGATATGCAATGCAGGACGGTTTAGTGAAGATGAGgttcttttct ... tttgttgcagGCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCA
EST: gi|26059786|gb|CA802700.1|CA802700
EST:     GAGAGTTATTTGAGCGGATATGCAATGCAGGACGGTTTAGTGAAGATGAG                         GCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCA
genomic: GAGAGTTATTTGAGCGGATATGCAATGCAGGACGGTTTAGTGAAGATGAGgttcttttct ... tttgttgcagGCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCA
EST: gi|24205189|gb|BU964442.1|BU964442
EST:     GAGAGTTATTTGAGCGGATATGCAATGCAGGACGGTTTAGTGAAGATGAG                         GCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCA
genomic: GAGAGTTATTTGAGCGGATATGCAATGCAGGACGGTTTAGTGAAGATGAGgttcttttct ... tttgttgcagGCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCA
EST: gi|254328432|gb|GR835397.1|GR835397
EST:     GAGAGTTATTTGAGCGGATATGCAATGCAGGACGGTTTAGTGAAGATGAG                         GCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCA
genomic: GAGAGTTATTTGAGCGGATATGCAATGCAGGACGGTTTAGTGAAGATGAGgttcttttct ... tttgttgcagGCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcagttctgttgcagttactgcttaccattaatgcctattatgttttgttgcagGCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATG
                                            ttttgtt  CT-rich tract
                                     tattatgttttgtt  TA-rich tract