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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttataatattcataaatgaaggagcattgtctttgacatttttttaacatgtgtatatttaattgctgctttgtgttttttttaatatttatattttagcttatagggtttgctttgtgggtgtgtagGCAAACTGGAAATGTGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGTTGCTTTCCCTACATGTTTGTCTGTAAACAACGTTGTCTGCCATTTCTCT

Basic information

species Glycine max
transcript GLYMA07G18500.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G18500.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g06870.t01 (Vitis vinifera), 3'ss of exon 3
-------gtaagcttataatattcataaatgaaggagcattgtctttgacatttttttaacatg----tgtatatttaattgct-------gctttgtgttttttttaatatttatattttagcttatagggtt-------tgctttgtgggtg--tgtagGCAAACTGGAAATGTGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGTTGCTTTCCCTACATGTTTGTCTGTAAACAACGTTGTCTGCCATTTCTCT
        | |  | ||||  ||  |   |   | |||||  | ||||   ||   ||||   |    ||||| ||   ||| |         ||||||||| |||       | |  | | | || |   | |       || ||||   |||  |||||||||||||| ||||||||||| ||||| |||| |||||| ||||| |||||||| || || || ||  | || |||||||||  ||| || || ||||| 
gtatgatatgatatgataaattttgtttttct-gaagcataatttttgtttttgagttaaagagataatgtatcttcttttgtttggcattagtttgtgtttatttggtgggatttgatatgggttttgatgctacttaagtgatttggttgtggctgtagGCAAACTGGGAATGTGTACAAAAATGTCAAGAAGAAGATCGAGAGGGGTGTTGCATTTCCGACTTGCATTTCAGTAAACAACACTGTTTGTCACTTCTCA

upper sequence: GLYMA07G18500.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0217g00020.t01 (Vitis vinifera), 3'ss of exon 2
---------------------------------------------------gtaagcttataatattcataaatgaaggag--cattgtctttgacat---ttttttaacatgtgtatatttaattgctgctttgtgttttttttaatatttatattttagcttatagggtttgctttgtgggtgtgtagGCAAACTGGAAATGTGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGTTGCTTTCCCTACATGTTTGTCTGTAAACAACGTTGTCTGCCATTTCTCT
                                                    || || ||  || ||||  | |  || |   |  ||| ||| |  |   ||| ||    | |||    || |||  |||   |        || ||  |  | || ||   |||||| |||| | | |  || || ||||||||||| ||| |||||||||| || |||| |||||||||||| |||||||| || || || ||  | ||||| ||||||  |||||| ||||| |||
gtgagccttctttttttacatagacattatattatgttgaatatttttttgataggcataatatgttcaatatttgagtatgccgatgtattttatttagatttcttgtgttttgttgggttgatttttgcaaagaaaaaggctttatcatattgttataatctataggttttgttgtttatgtatgcagGCAAACTGGCAATATGTACAAGAACGTTAAGAAGAAGATTGAGAGGGGTGTTGCCTTTCCAACTTGCATTTCTGTTAACAACACTGTCTGTCATTTTTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213591493|gb|DB955757.1|DB955757
EST:     AAGGCGAAGATTGTGGATATTTGTGAGAAAGGGGATTCATACATTCGAGA                         GCAAACTGGAAATGTGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGT
genomic: AAGGCGAAGATTGTGGATATTTGTGAGAAAGGGGATTCATACATTCGAGAgtaagcttat ... gggtgtgtagGCAAACTGGAAATGTGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGT
EST: gi|192298267|gb|FG991729.1|FG991729
EST:     AAGGCGAAGATTGTGGATATTTGTGAGAAAGGGGATTCATACATTCGAGA                         GCAAACTGGAAATGTGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGT
genomic: AAGGCGAAGATTGTGGATATTTGTGAGAAAGGGGATTCATACATTCGAGAgtaagcttat ... gggtgtgtagGCAAACTGGAAATGTGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGT
EST: gi|192303104|gb|FG994222.1|FG994222
EST:     AAGGCGAAGATTGTGGATATTTGTGAGAAAGGGGATTCATACATTCGAGA                         GCAAACTGGAAATGTGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGT
genomic: AAGGCGAAGATTGTGGATATTTGTGAGAAAGGGGATTCATACATTCGAGAgtaagcttat ... gggtgtgtagGCAAACTGGAAATGTGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGT
EST: gi|254325005|gb|GR834430.1|GR834430
EST:     AAGGCGAAGATTGTGGATATTTGTGAGAAAGGGGATTCATACATTCGAGA                         GCAAACTGGAAATGTGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGT
genomic: AAGGCGAAGATTGTGGATATTTGTGAGAAAGGGGATTCATACATTCGAGAgtaagcttat ... gggtgtgtagGCAAACTGGAAATGTGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGT
EST: gi|192297830|gb|FG988328.1|FG988328
EST:     AAGGCGAAGATTGTGGATATTTGTGAGAAAGGGGATTCATACATTCGAGA                         GCAAACTGGAAATGTGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGT
genomic: AAGGCGAAGATTGTGGATATTTGTGAGAAAGGGGATTCATACATTCGAGAgtaagcttat ... gggtgtgtagGCAAACTGGAAATGTGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGT
EST: gi|7147473|gb|AW509395.1|AW509395
EST:     AAGGCGAAGATTGTGGATATTTGTGAGAAAGGGGATTCATACATTCGAGA                         GCAAACTGGAAATGTGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGT
genomic: AAGGCGAAGATTGTGGATATTTGTGAGAAAGGGGATTCATACATTCGAGAgtaagcttat ... gggtgtgtagGCAAACTGGAAATGTGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGT
EST: gi|192334548|gb|FK024157.1|FK024157
EST:     AAGGCGAAGATTGTGGATATTTGTGAGAAAGGGGATTCATACATTCGAGA                         GCAAACTGGAAATGTGTGCAAGAATGTGAAGAGGA
genomic: AAGGCGAAGATTGTGGATATTTGTGAGAAAGGGGATTCATACATTCGAGAgtaagcttat ... gggtgtgtagGCAAACTGGAAATGTGTACAAGAATGTGAAGAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttttttaatatttatattttagcttatagggtttgctttgtgggtgtgtagGCAAACTGGAAATGTGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGTTGCTTTCCCTACATGTTTGTCTGTAAACAACGTTGTCTGCCATTTCTCT
      ttttaat  putative branch site (score: 3)
     tttttaatatttatat  TA-rich tract