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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattcaaaatcaccacaaaaaaaatagaacttcataaaaaaatgtctttttttaaacttctatgatgatgtctaatgaattggtgttttagGTGGCTCAAGTGCTGTTGACACTGCCCTATTCTTTCTCTCAACTGGGCATGCTATCAGGAATCTTGCTTCAGATTTTCTATGGAATCTTGGGAAGTTGGA

Basic information

species Glycine max
transcript GLYMA07G17810.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G17810.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g02030.t01 (Vitis vinifera), 3'ss of exon 2
gtaaattcaaaatcaccacaaaaaaaataga-acttcataaaaaaatgtctttt----tttaaacttctatga--tgatgtctaatgaat-tggtgttt-tagGTGGCTCAAGTGCTGTTGACACTGCCCTATTCTTTCTCTCAACTGGGCATGCTATCAGGAATCTTGCTTCAGATTTTCTATGGAATCTTGGGAAGTTGGA
|||||  || |  |||    ||||| | |||   | | |       | ||  ||    ||| ||   | |  |  | |  | |  ||  | || || |   ||||||| ||||| ||||||||||||||||| || |||||||| ||||||||||||||||| ||| |  | ||||| ||||||||  || ||||||| ||||
gtaaagccaga--cactgggaaaaagagagatggtgcttcttcttttttccgttggaatttcaagcacaagaaaataacattttttggttatgctgatcgcagGTGGCACAAGTTCTGTTGACACTGCCCTACTCCTTCTCTCAGCTGGGCATGCTATCAGGGATCATATTCCAGATATTCTATGGCCTCGTGGGAAGCTGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaatgtctttttttaaacttctatgatgatgtctaatgaattggtgttttagGTGGCTCAAGTGCTGTTGACACTGCCCTATTCTTTCTCTCAACTGGGCATGCTATCAGGAATCTTGCTTCAGATTTTCTATGGAATCTTGGGAAGTTGGA
                                 gtctaat  putative branch site (score: 3)
          tttttttaaacttcta  TA-rich tract