Sequence
atgc intronic sequence ATGC exonic sequencegttggtctgcaattcctctatctcctcatttgttaaatttgggggttattatggatagtgtagtgtaactgtgtaaagaattatttgtcacactgcatatctaatgctggcttaatttcagATTTTTGGAGCTCTTACCATTGCAAAACTTTTGTGTGTTCCTATTGTCATGTCCTATCATACCCATGTACCTGT
Basic information
species | Glycine max |
transcript | GLYMA07G17680.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G17680.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g01940.t01 (Vitis vinifera), 3'ss of exon 4
gttggtctgcaattcctctatctcctcatttgtta-aatttgggggttattatggatagtgtagtgtaactgtgtaaagaattatttgtcacactgcatatctaatgctggcttaatttcagATTTTTGGAGCTCTTACCATTGCAAAACTTTTGTGTGTTCCTATTGTCATGTCCTATCATACCCATGTACCTGT
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----------------------ttctcatttaacataattttgtttttgttttgggaaatcaaaggaagaactaatcattggcatgtgatgtatggattgacaattgctgactttattgtagGTCTTTGGTGCTCTCTTTATTGCAAAACTATTGTGTGTTCCTATAGTGATGTCTTATCACACCCATGTTCCAGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7590070|gb|AW705831.1|AW705831EST: TAGCTCGGTTTAAGCCTGACATAATACATGCATCGTCACCAGGCATAATG ATTTTTGGAGCTCTTACCATTGCAAAACTTTTGTGTGTTCCTATTGTCATG
genomic: TAGCTCGGTTTAAGCCTGACATAATACATGCATCGTCACCAGGCATAATGgttggtctgc ... ttaatttcagATTTTTGGAGCTCTTACCATTGCAAAACTTTTGTGTGTTCCTATTGTCATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aactgtgtaaagaattatttgtcacactgcatatctaatgctggcttaatttcagATTTTTGGAGCTCTTACCATTGCAAAACTTTTGTGTGTTCCTATTGTCATGTCCTATCATACCCATGTACCTGT
tgtaaagaattattt TA-rich tract