1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtctgtgctatatactttgctgcatttgcttttgctattacattaacacaaactatttagcaaattttctgccagtacaatctcattggttgcaatatattttcacagCTTATGGAGTACTCTTACCTGTTAGATATGGCGGACAAGACTGAGGATCCATACATGAGACTAGTATATGCTT
species | Glycine max |
transcript | GLYMA07G15930.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCCAGTTATCATTTTTGAACCAATGACAATGCTTCAGAAAATGGCTGAG CTTATGGAGTACTCTTACCTGTTAGATATGGCGGACAAGACTGAGGATCCAEST: gi|254332080|gb|GR846283.1|GR846283
genomic: TTCCAGTTATCATTTTTGAACCAATGACAATGCTTCAGAAAATGGCTGAGgtctgtgcta ... attttcacagCTTATGGAGTACTCTTACCTGTTAGATATGGCGGACAAGACTGAGGATCCA
EST: TTCCAGTTATCATTTTTGAACCAATGACAATGCTTCAGAAAATGGCTGAG CTTATGGAGTACTCTTACCTGTTAGATATGGCGGACAAGACTGAGGATCCAEST: gi|19053342|gb|BM732009.1|BM732009
genomic: TTCCAGTTATCATTTTTGAACCAATGACAATGCTTCAGAAAATGGCTGAGgtctgtgcta ... attttcacagCTTATGGAGTACTCTTACCTGTTAGATATGGCGGACAAGACTGAGGATCCA
EST: TTCCAGTTATCATTTTTGAACCAATGACAATGCTTCAGAAAATGGCTGAG CTTATGGAGTACTCTTACCTGTTAGATATGGCGGACAAGACTGAGGATCCA
genomic: TTCCAGTTATCATTTTTGAACCAATGACAATGCTTCAGAAAATGGCTGAGgtctgtgcta ... attttcacagCTTATGGAGTACTCTTACCTGTTAGATATGGCGGACAAGACTGAGGATCCA
tatttagcaaattttctgccagtacaatctcattggttgcaatatattttcacagCTTATGGAGTACTCTTACCTGTTAGATATGGCGGACAAGACTGAGGATCCATACATGAGACTAGTATATGCTT
tattttc CT-rich tract
ttgcaatatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtgctatatactttgctgcatttgcttttgctattacattaacacaaactatttagcaaattttctgccagtacaatctcattggttgcaatatattttcacagCTTATGGAGTACTCTTACCTGTTAGATATGGCGGACAAGACTGAGGATCCATACATGAGACTAGTATATGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT