1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gtggggttttatgtttttatttgcagcttatgcgctgttacctatctacctaccttaatttacccgtcatttatttccattttgttctgacttatgacagGTCGTTGTTCACAAAGATGGTGCAAGAGGGGTACATTTTAGGCGTGCCGGGCCTCGTCAAAAG
species | Glycine max |
transcript | GLYMA07G15170.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAATATTTTGTGCATGTTGATGACAGCGTTCCTCAAAAG GTCGTTGTTCACAAAGEST: gi|213598739|gb|DB956636.1|DB956636
genomic: GCAATATTTTGTGCATGTTGATGACAGCGTTCCTCAAAAGgttggttttt ... cttatgacagGTCGTTGTTCACAAAG
EST: GCAATATTTTGTGCATGTTGATGACAGCGTTCCTCANAAG GTCGTTGTTCACAAAGATGGTGCAAGAGGGGTACATTTTAGGCGTGCCGGGEST: gi|17023871|gb|BM094905.1|BM094905
genomic: GCAATATTTTGTGCATGTTGATGACAGCGTTCCTCAAAAGgttggttttt ... cttatgacagGTCGTTGTTCACAAAGATGGTGCAAGAGGGGTACATTTTAGGCGTGCCGGG
EST: GCAATATTTTGTGCATGTTGATGACAGCGTTCCTCAAAAG GTCGTTGTTCACAAAGATGGTGCAAGAGGGGTACATTTTAGGCGTGCCGGGEST: gi|151398093|gb|EV267971.1|EV267971
genomic: GCAATATTTTGTGCATGTTGATGACAGCGTTCCTCAAAAGgttggttttt ... cttatgacagGTCGTTGTTCACAAAGATGGTGCAAGAGGGGTACATTTTAGGCGTGCCGGG
EST: GCAATATTTTGTGCATGTTGATGACAGCGTTCCTCAAAAG GTCGTTGTTCACAAAGATGGAGCAAGAGGGGTACATTTTAGGCGTGCCGGGEST: gi|151396687|gb|EV266560.1|EV266560
genomic: GCAATATTTTGTGCATGTTGATGACAGCGTTCCTCAAAAGgttggttttt ... cttatgacagGTCGTTGTTCACAAAGATGGTGCAAGAGGGGTACATTTTAGGCGTGCCGGG
EST: GCAATATTTTGTGCATGTTGATGACAGCGTTCCTCAAAAG GTCGTTGTTCACAAAGATGGTGCAAGAGGGGTACATTTTAGGCGTGCCGGGEST: gi|209711853|gb|BW674115.1|BW674115
genomic: GCAATATTTTGTGCATGTTGATGACAGCGTTCCTCAAAAGgttggttttt ... cttatgacagGTCGTTGTTCACAAAGATGGTGCAAGAGGGGTACATTTTAGGCGTGCCGGG
EST: GCAATATTTTGTGCATGTTGATGACAGCGTTCCTCANAAG GTCGTTGTTCACAAAGATGGTGCAAGAGGGGTACATTTTAGGCGTGCCGGG
genomic: GCAATATTTTGTGCATGTTGATGACAGCGTTCCTCAAAAGgttggttttt ... cttatgacagGTCGTTGTTCACAAAGATGGTGCAAGAGGGGTACATTTTAGGCGTGCCGGG
ctacctaccttaatttacccgtcatttatttccattttgttctgacttatgacagGTCGTTGTTCACAAAGATGGTGCAAGAGGGGTACATTTTAGGCGTGCCGGGCCTCGTCAAAAG
ttctgac putative branch site (score: 2)
atttatttccatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggggttttatgtttttatttgcagcttatgcgctgttacctatctacctaccttaatttacccgtcatttatttccattttgttctgacttatgacagGTCGTTGTTCACAAAGATGGTGCAAGAGGGGTACATTTTAGGCGTGCCGGGCCTCGTCAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG