1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtggtgagagatgttcacttttacatttgttatttcattttcatttatgaatcttcttgcttattgatcaactcactattactattgtctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGCATTCTTTAAAGGTTTCCTTGGAGGACGTCTATAACGGCACAACAAAGAA
species | Glycine max |
transcript | GLYMA07G14540.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCATAATCCATTTGATATGTTTGAATCATTTTTTGGTGGAGCAAGCTTTGGTGEST: gi|209709339|gb|BW678883.1|BW678883
genomic: TCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAAGC-TT--TGgtggtgagag ... tgtctctt
EST: TCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAAGCTTTG GTGGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGEST: gi|33388612|gb|CA851819.1|CA851819
genomic: TCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAAGCTTTGgtggtgagag ... tgtctcttagGTGGTGGT---AGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGG
EST: TCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAAGCTTTGGTGEST: gi|254341868|gb|GR853005.1|GR853005
genomic: TCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAAGC-TT--TGgtggtgagag ... tgtctctt
EST: TCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAAGCTTTG GTGGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGEST: gi|120491272|gb|EH219439.1|EH219439
genomic: TCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAAGCTTTGgtggtgagag ... tgtctcttagGTGGTGGT---AGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGG
EST: TCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAAGCTTTGGTGEST: gi|254327121|gb|GR836730.1|GR836730
genomic: TCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAAGC-TT--TGgtggtgagag ... tgtctctt
EST: TCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAAGCTTTGGTGEST: gi|209702366|gb|BW656341.1|BW656341
genomic: TCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAAGC-TT--TGgtggtgagag ... tgtctctt
EST: TCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAAGCTTTG GTGGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGEST: gi|18040211|gb|BM308505.1|BM308505
genomic: TCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAAGCTTTGgtggtgagag ... tgtctcttagGTGGTGGT---AGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGG
EST: TCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAAGCTTTGGTGEST: gi|207737525|gb|GD714127.1|GD714127
genomic: TCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAAGC-TT--TGgtggtgagag ... tgtctctt
EST: TCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAAGCTTTG GTGGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGEST: gi|298172387|gb|HO019427.1|HO019427
genomic: TCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAAGCTTTGgtggtgagag ... tgtctcttagGTGGTGGT---AGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGG
EST: TCATAATCCATTTGATATATTTGAATCATTTTTTGGCGGAGCAAGCTTTGGTGEST: gi|193647664|gb|FK588019.1|FK588019
genomic: TCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAAGC-TT--TGgtggtgagag ... tgtctctt
EST: TCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAAGCTTTG GTGGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGEST: gi|192322850|gb|FK014781.1|FK014781
genomic: TCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAAGCTTTGgtggtgagag ... tgtctcttagGTGGTGGT---AGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGG
EST: TCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAAGCTTTG GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGCEST: gi|163923429|gb|EH038356.1|EH038356
genomic: TCATAATCCATTTGATATATTTGAATCATTTTTTGGTGGAGCAAGCTTTGgtggtgagag ... tgtctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGC
EST: TTGATATATTTGAATCATTTTTTGGTGGAGCAAGCTCTGGTG GTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTG
genomic: TTGATATATTTGAATCATTTTTTGGTGGAGCAAGCT-T--TGgtggtgagag ... tgtctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTG
tcatttatgaatcttcttgcttattgatcaactcactattactattgtctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGCATTCTTTAAAGGTTTCCTTGGAGGACGTCTATAACGGCACAACAAAGAA
aactcac putative branch site (score: 2)
ttgtctctt putative PPT
tattactatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggtgagagatgttcacttttacatttgttatttcattttcatttatgaatcttcttgcttattgatcaactcactattactattgtctcttagGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGCATTCTTTAAAGGTTTCCTTGGAGGACGTCTATAACGGCACAACAAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA