1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agtgtgttaaatttaggagcctagtgagaaattcatttattgtaaacctcttggatgtgttttcggatatgatggtctgatttattgttatacgtttcagGTTTTCAAGTTAAAGTAGTATCATCGGATAACTATGTAAAGAGTGATTCAGGGCTCATATACCGAGATTTTGTAGTTGGTCAAGGTGATTTTCCAAAGGA
species | Glycine max |
transcript | GLYMA07G14250.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAGAAAGAAAACAATGCCCCAGAGGACTTTCCAAATTTTGTTAGAGAAG GTTTTCAAGTTAAAGTAGTATCATCGGATAACTATGTAAAGAGTGATTCAGEST: gi|298176047|gb|HO015452.1|HO015452
genomic: ACAGAAAGAAAACAATGCCCCAGAGGACTTTCCAAATTTTGTTAGAGAAGgtgacaatct ... tacgtttcagGTTTTCAAGTTAAAGTAGTATCATCGGATAACTATGTAAAGAGTGATTCAG
EST: ACAGAAAGAAAACAGTGCCCCAGAGGACTTTCCAAATTTTGTTAGAGAAG GTTTTCAAGTTAAAGTAGTATCATCGGATAACTATGTAAAGAGTGATTCAG
genomic: ACAGAAAGAAAACAATGCCCCAGAGGACTTTCCAAATTTTGTTAGAGAAGgtgacaatct ... tacgtttcagGTTTTCAAGTTAAAGTAGTATCATCGGATAACTATGTAAAGAGTGATTCAG
acctcttggatgtgttttcggatatgatggtctgatttattgttatacgtttcagGTTTTCAAGTTAAAGTAGTATCATCGGATAACTATGTAAAGAGTGATTCAGGGCTCATATACCGAGATTTTGTAGTTGGTCAAGGTGATTTTCCAAAGGA
gtctgat putative branch site (score: 4)
tgatttattgttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgtgttaaatttaggagcctagtgagaaattcatttattgtaaacctcttggatgtgttttcggatatgatggtctgatttattgttatacgtttcagGTTTTCAAGTTAAAGTAGTATCATCGGATAACTATGTAAAGAGTGATTCAGGGCTCATATACCGAGATTTTGTAGTTGGTCAAGGTGATTTTCCAAAGGA
-gtgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - ggatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgatgg