1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgctataaaaaagttgtcacaactaaggttcatgattaacttaaaaaatccaacatccaaattcagtaagtttaatcattatcttcatctactgttgcagACTCAAGGACGTGAATCCATTGCTGCCAAGCTTGTCGCAAATTTAATTACAGAAGCAGGTGCAAATCGTGTACTTGCTTGTGACCTCCATTCTGGGCAGT
species | Glycine max |
transcript | GLYMA07G12660.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATATTACTGCTGTCATTCCGTATTTTGGATATGCCAGAGCTGATAGAAAG ACTCAAGGACGTGAATCCATTGCTGCCAAGCTTGTCGCAAATTTAATTACAEST: gi|27446243|gb|CA953366.1|CA953366
genomic: ATATTACTGCTGTCATTCCGTATTTTGGATATGCCAGAGCTGATAGAAAGgtctgcttgt ... actgttgcagACTCAAGGACGTGAATCCATTGCTGCCAAGCTTGTCGCAAATTTAATTACA
EST: ATATTACTGCTGTCATTCCGTATTTTGGATATGCCAGAGCTGATAGAAAG ACTCAAGGACGTGAATCCATTGCTGCCAAGCTTGTCGCAAATTTAATTACAEST: gi|16997052|gb|BM086424.1|BM086424
genomic: ATATTACTGCTGTCATTCCGTATTTTGGATATGCCAGAGCTGATAGAAAGgtctgcttgt ... actgttgcagACTCAAGGACGTGAATCCATTGCTGCCAAGCTTGTCGCAAATTTAATTACA
EST: ATATTACTGCTGTCATTCCGTATTTTGGATATGCCAGAGCTGATAGAAAG ACTCAAGGACGTGAATCCATTGCTGCCAAGCTTGTCEST: gi|209708416|gb|BW665391.1|BW665391
genomic: ATATTACTGCTGTCATTCCGTATTTTGGATATGCCAGAGCTGATAGAAAGgtctgcttgt ... actgttgcagACTCAAGGACGTGAATCCATTGCTGCCAAGCTTGTC
EST: ATATTACTGCTGTCATTCCGTATTTTGGATATGCCAGAGCTGATAGAAAG ACTCAAGGACGTGAAT
genomic: ATATTACTGCTGTCATTCCGTATTTTGGATATGCCAGAGCTGATAGAAAGgtctgcttgt ... actgttgcagACTCAAGGACGTGAAT
aaatccaacatccaaattcagtaagtttaatcattatcttcatctactgttgcagACTCAAGGACGTGAATCCATTGCTGCCAAGCTTGTCGCAAATTTAATTACAGAAGCAGGTGCAAATCGTGTACTTGCTTGTGACCTCCATTCTGGGCAGT
gtttaat putative branch site (score: 4)
taagtttaatcattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctataaaaaagttgtcacaactaaggttcatgattaacttaaaaaatccaacatccaaattcagtaagtttaatcattatcttcatctactgttgcagACTCAAGGACGTGAATCCATTGCTGCCAAGCTTGTCGCAAATTTAATTACAGAAGCAGGTGCAAATCGTGTACTTGCTTGTGACCTCCATTCTGGGCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - -taaaaaa
- - - - - - - tgtcaca
- - - - - - - - - - - - - - ttcatga
- - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - -ccaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaaatt