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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtattctagcaaattgatgcacttattagttctgttttgcttctgcttttgtcttttaagatttttagctggaaagtgcaatcaaattcattatttctgttccagaatcatccttctaaatattttgctgactgattttatctactctcttactaagGACTATGTTGCAACTCGGTGGTATCGTGCACCTGAACTATGTGGTTCTTTTTTCTCAAAA

Basic information

species Glycine max
transcript GLYMA07G11470.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G11470.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G73670.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagtattctagcaaattgatgcacttattagttctgttttgcttctgcttttgtcttttaagatttttagc-tggaaagtgcaatcaaattcattatttctgttccagaatcatccttctaaatattttgctgactgatt-ttatctactctcttacta-agGACTATGTTGCAACTCGGTGGTATCGTGCACCTGAACTATGTGGTTCTTTTTTCTCAAAA
                                                            | ||   |||| |    | | ||  |  ||  | |  | ||   ||   | | ||| ||  | ||    | |  |||| | | |||   ||||| || | | |||| |||||||| ||||||||||| ||||| |||||||| ||||| || ||||||||||||
-----------------------------------------------------------gtgagtcatttatcaccaagactgtga--aagctta--agttgcattagggtaacattctgtttaagtgctggtggactcactcttactaactctgtttcaatagGATTATGTTGCTACTCGGTGGTACCGTGCCCCTGAACTCTGTGGATCATTTTTCTCAAAA

upper sequence: GLYMA07G11470.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G18150.3 (Arabidopsis thaliana), 3'ss of exon 4
gtaagtattctagcaaattgatgcacttattagttctgttttgcttctgcttttgtcttttaagatttttagctggaaagtgcaatcaaattcattatttctgttccagaatcatccttctaaatattttgctgactgattttatctactctcttacta-agGACTATGTTGCAACTCGGTGGTATCGTGCACCTGAACTATGTGGTTCTTTTTTCTCAAAA
                                                            | ||   | || ||  || ||| || ||||    ||  ||  | | |    | |   || | ||    |||    || ||||  | ||      |  |  |||| ||||| || ||||||||||||||||| |||||||| ||||| || |||||||| |||
-----------------------------------------------------------gtgagtcatctaactc-aatgtgaaagcaaaactgttcattaggcttcctcttaactattttcaaatgcttgtgagctcatttcgtttatatggattttgtagGATTATGTAGCTACTCGGTGGTATCGTGCCCCTGAACTCTGTGGATCGTTTTTCTCCAAA

upper sequence: GLYMA07G11470.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv17s0000g02570.t01 (Vitis vinifera), 3'ss of exon 3
gtaagtattctagcaaattgatgcacttattagttctgttttgcttctgcttttgtcttttaagatttttagctggaaagtgcaatcaaattcattatttctgttccagaatcatcctt--ctaaatattttg-ctgactgattttatctactctcttactaagGACTATGTTGCAACTCGGTGGTATCGTGCACCTGAACTATGTGGTTCTTTTTTCTCAAAA
||| ||| ||| || |    | | |||  | |  | || |    |||||| |  | |    || |||  |        |||    |  | || || ||      |  | |||  |      ||| | | |||  || |     ||||| |||| | | |  ||||||||||||||||| || ||||| ||||| |||||||| ||||| || |||||||| || 
gtatgtagtcttgcca----aagtactcctgacatttgctgcatttctgcatacggccgagaaaattactt-------agtctcttttattttatgat----actttaaaatttttgaaagctagaaactttaactaatcatatttatttactttttca--aagGACTATGTTGCAACCCGATGGTACCGTGCTCCTGAACTTTGTGGCTCCTTTTTCTCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagaatcatccttctaaatattttgctgactgattttatctactctcttactaagGACTATGTTGCAACTCGGTGGTATCGTGCACCTGAACTATGTGGTTCTTTTTTCTCAAAA
                                 ttttatctactctctt  CT-rich tract
           ttctaaatatttt  TA-rich tract