1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gcaagtactccattatattgttacgatggttcttcttttgaatgactgctctgaaacgttgatgacattgtctttgttttctcttttttccttttcaatatttggcagAGCAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCTGAAGTAAGGGAACTGATAAATGATTTTTACTCAAG
species | Glycine max |
transcript | GLYMA07G08370.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATATGGAGGACTTTGTGCACTTGCAACATTTGATCGGGCAGAATTAAAG AGCAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCTEST: gi|6667941|gb|AW279392.1|AW279392
genomic: CATATGGAGGACTTTGTGCACTTGCAACATTTGATCGGGCAGAGTTAAAGgcaagtactc ... tatttggcagAGCAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCT
EST: TATGGAGGACTTTGTGCACTTGCAACATTTGATCGGGCAGAGTTAAAG AGCAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCTEST: gi|254321708|gb|GR825025.1|GR825025
genomic: TATGGAGGACTTTGTGCACTTGCAACATTTGATCGGGCAGAGTTAAAGgcaagtactc ... tatttggcagAGCAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCT
EST: TGTGCACTTGCAACATTTGATCGGGCAGAGTTAAAG AGC-AAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTA-CTEST: gi|254321707|gb|GR825024.1|GR825024
genomic: TGTGCACTTGCAACATTTGATCGGGCAGAGTTAAAGgcaagtactc ... tatttggcagAGCAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCT
EST: CATATGGAGGACTTTGTGCACTTGCAACATTTGATCGGGCAGAGTTAAAG AGCAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCTEST: gi|7685795|gb|AW756443.1|AW756443
genomic: CATATGGAGGACTTTGTGCACTTGCAACATTTGATCGGGCAGAGTTAAAGgcaagtactc ... tatttggcagAGCAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCT
EST: CATATGGAGGACTTTGTGCACTTGCAACATTTGATCGGGCAGAGTTAAAG AGCAAAGTTATAGACAATTCCAACTTCCGCAATGTCTTAGAGTTAGTACCT
genomic: CATATGGAGGACTTTGTGCACTTGCAACATTTGATCGGGCAGAGTTAAAGgcaagtactc ... tatttggcagAGCAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCT
aaacgttgatgacattgtctttgttttctcttttttccttttcaatatttggcagAGCAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCTGAAGTAAGGGAACTGATAAATGATTTTTACTCAAG
cgttgat putative branch site (score: 5)
ttgtctttgttttctc putative PPT
ttttcaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtactccattatattgttacgatggttcttcttttgaatgactgctctgaaacgttgatgacattgtctttgttttctcttttttccttttcaatatttggcagAGCAAAGTTATAGACAATTCCAACTTCCGCAATTTCTTAGAGTTAGTACCTGAAGTAAGGGAACTGATAAATGATTTTTACTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG