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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattactttattattgttgcatctctattggttccttaactcaacattttgtgcactttatttgcacaagtgcatattagtttataaaccttaacagtggtttgttatgtaatattgaactttaataacttatatagttaaattttgttggtctcagACAATCTCTTACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTTGTTTTTCAG

Basic information

species Glycine max
transcript GLYMA07G08320.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G08320.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv15s0048g02010.t01 (Vitis vinifera), 3'ss of exon 3
gtgattactttattattgttgcatctctattggttccttaactcaacattttgtgcactttatttgcacaagtgcatattagtttataaaccttaacagtggtttgttatgtaatattgaactttaataacttatatagttaaattttgttggtctcagACAATCTCTTACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTTGTTTTTCAG
                                              || | |||  |   |   || | |  || ||     || || |   | |  |   |||||      |||        |||| || || |         || | |||||  |||||| |||| ||||||||||| || |||||||| |||||||| ||||| || |||||||||
-------------------------------------------ttccagtatgtttatcatgactg-atagttgtat-----ttcatgagaataagga--tgtttgcc-cacaatcaaagttgttaacaatttgtt-------gttattttggttgcagACAGTCTCCTACATGGCTGAGCGGGTGGTTGGCACTGGTTCCTTTGGGGTCGTTTTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193585663|gb|FK541189.1|FK541189
EST:     GTGGTCGAGATGGACAACCAAAGCAG                         ACAATCTCTTACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTT
genomic: GTGGTCGAGATGGACAACCAAAGCAGgtgattactt ... ttggtctcagACAATCTCTTACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTT
EST: gi|193726623|gb|FK658591.1|FK658591
EST:     GTGGTCGAGATGGTACTAACCAAAGACAG                         ACAATCTCTTACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGT
genomic: GTGGTCGAGATGG-AC-AACCAAAG-CAGgtgattactt ... ttggtctcagACAATCTCTTACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGT
EST: gi|208124691|gb|GD925145.1|GD925145
EST:     GACAAATAATTACAACTGCCATTGGTGGTCGAGATGGACAACCAAAGCAG                         ACAATCTCTTACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTT
genomic: GACAAATAATTACAACTGCCATTGGTGGTCGAGATGGACAACCAAAGCAGgtgattactt ... ttggtctcagACAATCTCTTACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTT
EST: gi|193602745|gb|FK560226.1|FK560226
EST:     GTGGTCGAGATGGACAACCAAAGCAG                         ACAATCTCTTACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTT
genomic: GTGGTCGAGATGGACAACCAAAGCAGgtgattactt ... ttggtctcagACAATCTCTTACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttatgtaatattgaactttaataacttatatagttaaattttgttggtctcagACAATCTCTTACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTTGTTTTTCAG
                    taataac  putative branch site (score: 1)
                                        ttttgtt  putative PPT
     tgtaatattgaacttt  TA-rich tract