Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttagacgatgaagtttgcttttttgtgtttttgagctaaattttcttgttaatataagaatatgatcaaatttctgttatctgttatatgattcttatgtcgttatattttttttttcagGTTCTTATTGATAATATTAAAGAGTTTGCTCCAATAATATATACTCCTACAGTTGGATTAGTGTGTCAAAATTATTCAGGGTTATTTAGGCGTCCACGTG

Basic information

species Glycine max
transcript GLYMA07G08110.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G08110.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G00570.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgagttagacgatgaagtttgcttttttgtgtttttgagctaaattttcttgttaatataagaatatgatcaaatttctgttatctgttatatgattcttatgtcgttatattttttttttcagGTTCTTATTGATAATATTAAAGAGTTTGCTCCAATAATATATACTCCTACAGTTGGATTAGTGTGTCAAAATTATTCAGGGTTATTTAGGCGTCCACGTG
                                         | | | || |||    ||    ||||   ||  |  | ||  |  | |   |    || ||  || |       || | | ||||||||||||||||| || ||||| ||||| || || ||||| |||||||| |||||| | || ||||| || ||||| || || | |||  | ||| | |
----------------------------------------gtgagtctttttggctcta----aatactgtcccacat-tgacacatctctgagacatcataactcatc------ttctctgcagGTTCTTATTGATAACATCAAAGATTTTGCCCCCATTATATACACTCCTACGGTTGGACTTGTTTGTCAGAACTATTCTGGTTTGTATAGAAGACCAAGAG

upper sequence: GLYMA07G08110.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv15s0046g03670.t01 (Vitis vinifera), 3'ss of exon 3
gtgagttagacgatgaagtttgcttttttgtgtttttgagctaaattttcttgttaatataagaatatgatcaaatttctgttatctgttatatgattcttatgtcgttatattttttttttcagGTTCTTATTGATAATATTAAAGAGTTTGCTCCAATAATATATACTCCTACAGTTGGATTAGTGTGTCAAAATTATTCAGGGTTATTTAGGCGTCCACGTG
                            |  ||||    |       | || | |  ||     |    ||  ||    | | ||||  || |  | || |||       |  ||| || | ||||||||||||||||| || ||||| ||||| || |||||||| ||||| ||||||||||| ||||||||||| || || ||||| ||||| ||||||||||
---------------------------gtaggtttggtggtggtgcatactagctggtaatcttagcccatttaagcattttaatctaataaagcaatcctat-------tgatttcttatccagGTTCTTATTGATAACATCAAAGACTTTGCACCGATAATATACACTCCCACAGTTGGATTGGTGTGTCAAAACTACTCGGGGTTGTTTAGACGTCCACGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaatttctgttatctgttatatgattcttatgtcgttatattttttttttcagGTTCTTATTGATAATATTAAAGAGTTTGCTCCAATAATATATACTCCTACAGTTGGATTAGTGTGTCAAAATTATTCAGGGTTATTTAGGCGTCCACGTG
                                     ttatattttttttttc  CT-rich tract
                  ttatatgattcttatg  TA-rich tract