1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aagagttccgttcatccagattaatgtatgcttaaattatgaagttatcaaattagatgagcagaatattatctgtatgtagcaataatttggattatagTCTCTTCTGGTTGCAGGATAGGAAGACTTCCACCTGTCGTTAGGACAGCAGTACCTGTTGATGGGAGGTTTGAGCATTTAGTTCTTTCTTGCAATGCAAC
species | Glycine max |
transcript | GLYMA07G07750.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGTATGCACCTGGCCGACTCTATCACATTGTGGAGCGAAAGCCATTTAG TCTCTTCTGGTTGCAGGATAGGAAGACTTCCACCTGTCGTTAGGACAGCAGEST: gi|22934119|gb|BU551258.1|BU551258
genomic: CTGTATGCACCTGGCCGACTCTATCACATTGTGGAGCGAAAGCCATTTAGgtaaagtatg ... tggattatagTCTCTTCTGGTTGCAGGATAGGAAGACTTCCACCTGTCGTTAGGACAGCAG
EST: CTGTATGCACCTGGCCGACTCTATCACATTGTGGAGCGAAAGCCATTTAG TNNNNNCTGGTTGCAGGATAGGAAGACTTCCACCTGTCGTTAGGACAGCAG
genomic: CTGTATGCACCTGGCCGACTCTATCACATTGTGGAGCGAAAGCCATTTAGgtaaagtatg ... tggattatagTCTCTTCTGGTTGCAGGATAGGAAGACTTCCACCTGTCGTTAGGACAGCAG
tatcaaattagatgagcagaatattatctgtatgtagcaataatttggattatagTCTCTTCTGGTTGCAGGATAGGAAGACTTCCACCTGTCGTTAGGACAGCAGTACCTGTTGATGGGAGGTTTGAGCATTTAGTTCTTTCTTGCAATGCAAC
aataatttggattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagagttccgttcatccagattaatgtatgcttaaattatgaagttatcaaattagatgagcagaatattatctgtatgtagcaataatttggattatagTCTCTTCTGGTTGCAGGATAGGAAGACTTCCACCTGTCGTTAGGACAGCAGTACCTGTTGATGGGAGGTTTGAGCATTTAGTTCTTTCTTGCAATGCAAC
- - - - - -tcatcca
- - - - - - - - - - - - -gtatgct
- - - - - - - - - - - - - - - - - - -tatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatgt