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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatcttgtattattgaatattgctgcgaaactctataccttgagtagtttgccttgtgttaattttaagaattgtgtgtgatcatattggatattataataatttcagGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTG

Basic information

species Glycine max
transcript GLYMA07G07540.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58023135|gb|CX709876.1|CX709876
EST:     CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT
genomic: CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATgtaagaatct ... ataatttcagGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT
EST: gi|31464781|gb|CD406794.1|CD406794
EST:     CCTTCCATAGGCTTTATCAATAAGATCTATCACCCTAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT
genomic: CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATgtaagaatct ... ataatttcagGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT
EST: gi|14011775|gb|BG726697.1|BG726697
EST:     CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT
genomic: CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATgtaagaatct ... ataatttcagGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT
EST: gi|15812810|gb|BI785085.1|BI785085
EST:     CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT
genomic: CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATgtaagaatct ... ataatttcagGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT
EST: gi|151400703|gb|EV270517.1|EV270517
EST:     CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT
genomic: CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATgtaagaatct ... ataatttcagGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT
EST: gi|23730924|gb|BU763571.1|BU763571
EST:     CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGAT                         GTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT
genomic: CCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATgtaagaatct ... ataatttcagGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgttaattttaagaattgtgtgtgatcatattggatattataataatttcagGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTG
   tgttaat  putative branch site (score: 3)
                         tgatcatattggatat  TA-rich tract