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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttttttttgttttgaacattgaagctaaaagagtttgtttggtttaaagaatgtaagatttgaactttgaaggatgtattcaatattcatattgcagGATGCTTGTGTATGAATATGTTGACAATGGGAATCTAGAACAGTGGCTGCATGGGGATGTTGGACCTGTAAGCCCAATGACATGGGATATCCGAATGAAC

Basic information

species Glycine max
transcript GLYMA07G07250.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G07250.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os03g03410.1 (Oryza sativa), 3'ss of exon 2
gtatatttttttttgttt-tgaacattgaagctaaaagagtttgtttggtttaaagaatgtaagatttgaactttgaaggatgtattcaatattcatattgcagGATGCTTGTGTATGAATATGTTGACAATGGGAATCTAGAACAGTGGCTGCATGGGGATGTTGGACCTGTAAGCCCAATGACATGGGATATCCGAATGAAC
||| | |    | | ||  | ||  |||    | |          |  | |||| | ||||   | |   || |||  |  |   || ||           ||||||||| |||||||||||||| ||||| || ||||| || || ||||| ||||| ||||| ||    || |||||| | || |||||  || | ||||||
gtacaatgaaatctcttcatcaattttgtgcattattattccctctctgattaatggatgttttactc--acattgccgttttggttgaa-----------cagGATGCTCGTGTATGAATATGTAGACAACGGCAATCTTGATCAATGGCTTCATGGTGATGTAGGGGAAGTGAGCCCACTAACTTGGGAAGTCAGGATGAAC

upper sequence: GLYMA07G07250.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G014366_T03 (Zea mays), 3'ss of exon 2
--------gtatatttttttttgttttgaacattgaagctaaaagagtttgtttggtttaaagaatgtaagatttgaactttgaaggatgtattcaatattcatatt---gcagGATGCTTGTGTATGAATATGTTGACAATGGGAATCTAGAACAGTGGCTGCATGGGGATGTTGGACCTGTAAGCCCAATGACATGGGATATCCGAATGAAC
        | |||||  | | | || |  |  | |   |    | |  |  | |   ||         || | | |||   |||    |||        |  ||  |    ||||||||||||||| || ||||| |||||||| ||||| || |||||||| ||||| |||||||||   ||||||||| | ||||||||  || | ||||||
gtatgatggcatattgctatctcttcttcat-tcggtccggtgacacctactctcagtttggattctcaataatggaagcctgattcctgtcactgtcgtctatgcttgaacagGATGCTTGTGTACGAGTATGTGGACAATGGTAATCTTGACCAGTGGCTTCATGGTGATGTTGGAGAAGTAAGCCCACTAACATGGGACGTCAGGATGAAC

upper sequence: GLYMA07G07250.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv15s0046g02030.t01 (Vitis vinifera), 3'ss of exon 2
gtatatttttttttgttttgaacattgaagctaaaagagtttgttt-ggtttaaagaatgtaagatttgaactttgaaggatgtattcaatattcatat-tgcagGATGCTTGTGTATGAATATGTTGACAATGGGAATCTAGAACAGTGGCTGCATGGGGATGTTGGACCTGTAAGCCCAATGACATGGGATATCCGAATGAAC
||||   |     | || ||   | |   |  |   |  ||| ||  || |  || ||  ||| ||||     ||  |   |  |||   | ||  | | |  ||||||||||||||||| ||||| |||||||| ||| | || |||||||| ||||||||||| ||    || |||||  ||||||||||||| || || |||
gtattgctacccatcttctgctaaatcctgacactgggttttcttgaggatccaaaaaactaacattt-----tttcatctttcatttgttttttttttgtctagGATGCTTGTGTATGAGTATGTGGACAATGGTAATTTGGACCAGTGGCTTCATGGGGATGTAGGGGAAGTCAGCCCTCTGACATGGGATATTCGGATTAAC

upper sequence: GLYMA07G07250.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S568_2V6.1 (Physcomitrella patens), 3'ss of exon 3
gtatatttttttttgttttgaacattgaagctaaaagagtttgtttggtttaaagaatgtaagatttgaactttgaaggatgtattcaatattcatattgcagGATGCTTGTGTATGAATATGTTGACAATGGGAATCTAGAACAGTGGCTGCATGGGGATGTTGGACCTGTAAGCCCAATGACATGGGATATCCGAATGAAC
||  |   ||| || ||   | |  || || |       ||||| ||     |  | | |   |   |  |  ||     |   |      |   | ||| |||||||||||||| || || || |||||||||||||| || |||||||| |||||   | |   ||    || | || |  |||||||    || |||   
gtgaagcatttattcttcccacc--tggagtt-------tttgtgtgccagcacaattctcttacacgtgcaatgctaacttcgtctctcgtggcttttgtagGATGCTTGTGTACGAGTACGTGGACAATGGGAATCTGGAGCAGTGGCTACATGGACCTCTGTCACAAACAAACACACTTCCATGGGAAGCTCGCATGCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaaagaatgtaagatttgaactttgaaggatgtattcaatattcatattgcagGATGCTTGTGTATGAATATGTTGACAATGGGAATCTAGAACAGTGGCTGCATGGGGATGTTGGACCTGTAAGCCCAATGACATGGGATATCCGAATGAAC
                                  tattcaatattcatat  TA-rich tract