Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacttaatatttgtttattattttatttatgcctttggtatggcatatgaatgattaaatatgcttttcctgtgagtgtaaaccttgacctatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGATATTGTTCTTGCTGCAGCATATGCACATGAGCTGCCACAATATGGTCTTG

Basic information

species Glycine max
transcript GLYMA07G06580.1
intron # 3
splice site 3'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G06580.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G090738_T01 (Zea mays), 3'ss of exon 3
---------------------------------------------------------------tacttaatattt---gtttattattttatttatgcctttggtatggcatatgaatgattaaatatgcttttcctgtg--------agtgtaaaccttgacctatttact-agAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGATATTGTTCTTGCTGCAGCATATGCACATGAGCTGCCACAATATGGTCTTG
                                                               | |||   | |    |  |||  |  | ||  || |||| |     | |     | ||||  |  ||  ||   |          | ||||   ||| |   || | || ||| ||||||||||||  ||||||||||  ||||||| || ||  | || |||||| |||||||||| |||||| | | ||||||||||| ||| ||||| |
gtatccttcaaatttattatttggtgacttcttgttgggtttcaactctagcctaccccaacttgcttgggactaaaaggctatgttgatgttgttgtcttttgatcatcctcctgcttattattttggcactttaagcattggcggcattgtatctcttaataaatctccttagACCAACAAGGACATCATTGCACAAATCGTATCTGCAAGTATCACGGGTGATATTATTCTTGCTGCTGCATATTCCCGTGAGCTGCCACGATACGGTCTAG

upper sequence: GLYMA07G06580.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G163081_T04 (Zea mays), 3'ss of exon 3
-tacttaatatttgttt-attattttatttatgcct-ttggtatggcatatgaatgattaaatatgcttttcctgtgagtgtaaaccttgacctatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGATATTGTTCTTGCTGCAGCATATGCACATGAGCTGCCACAATATGGTCTTG
 ||     |  || ||| |  || |  ||| | ||| ||| ||||| |  |  |    |  | | || | |  |||   | | |||    |  ||||   |||| ||||||||||||   ||| ||||| ||||||||||| || || || ||||| ||||||||| | || ||  | |||||| |||||| |||||||||||
gtatcctttgattatttgaccatctggtttctacctattgctatggtactttga--gctccagaagcatatattgtatctcttaact---agatattc-ttagACCAACAAGGACATCACTGCCCAAATCATATCTGCTAGTATAGCGGGTGATATGGTTCTTGCTTCTGCCTACTCGCATGAGTTGCCACGATATGGTCTTG

upper sequence: GLYMA07G06580.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0094g00870.t01 (Vitis vinifera), 3'ss of exon 3
-tacttaatatttgtttattattttatttatgcctttggtatggcatatgaatgattaaatatgcttttcctgtgagtgt--aaaccttgacctatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGATATTGTTCTTGCTGCAGCATATGCACATGAGCTGCCACAATATGGTCTTG
 |   | |  ||| ||   | ||| | | |||   ||  | | |  | | |      ||  || || | |   |||   |  ||||||| ||||  ||||||||  |||||||| ||| |||| ||||||| ||| |||||||||||||| ||||| || |||||| | |||||| | |||||||| || || ||||| ||||
ctgggttactttt-ttccctctttcaatgatgagctt--tgttgtttgttatctgccaagcattctgtgctgttgatctttgaaaccttaaccttgttactagACTAACAAGGATATTATTGCCCAAATAACATCCGCTAGCATTGCTGGTGATATAGTCCTTGCTTCTGCATATTCTCATGAGCTACCTCACTATGGACTTG

upper sequence: GLYMA07G06580.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv00s0174g00190.t01 (Vitis vinifera), 3'ss of exon 4
tacttaatatttgtttattattttatttatgcctttggtatgg---catatgaatgattaaa---tatgcttttcctgtgagtgtaaaccttgacctatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGATATTGTTCTTGCTGCAGCATATGCACATGAGCTGCCACAATATGGTCTTG
      || ||| |||   || |  || | |   ||  | |||    | ||  |  || | |   | |  ||||||| |   |||||||||| ||    ||   |||  |||||||| ||   ||| ||||| ||||||||||| |||||||| ||||| |||||||| || || ||| | ||||| ||||| || ||||| ||||
------atttttatttgacatatagttgaaggtcttattttgggggtaaatagacaatcatactgtttctttttcctctttttgtaaaccttaacactattctcagACGAACAAGGATATAACTGCTCAAATTATATCTGCTAGTATTGCTGGTGATATGGTTCTTGCAGCGGCCTATTCCCATGAACTGCCTCACTATGGGCTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7233784|gb|AW569127.1|AW569127
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|193631665|gb|FK582348.1|FK582348
EST:     AGGACAAGAACAATTATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|9564071|gb|BE473580.1|BE473580
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTGT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|33387329|gb|CA850536.1|CA850536
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|7478382|gb|AW666243.1|AW666243
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|38192446|gb|CF921652.1|CF921652
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|10231886|gb|BE800774.1|BE800774
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|192328302|gb|FK020013.1|FK020013
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|10232170|gb|BE801058.1|BE801058
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|192333617|gb|FK025434.1|FK025434
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|151409715|gb|EV279523.1|EV279523
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|10846870|gb|BF069669.1|BF069669
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|192333816|gb|FK025077.1|FK025077
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|26058287|gb|CA801201.1|CA801201
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|18721850|gb|BM523372.1|BM523372
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|24205962|gb|BU965215.1|BU965215
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|17964387|gb|BM271123.1|BM271123
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|22523868|gb|BU082679.1|BU082679
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|10848276|gb|BF070811.1|BF070811
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|24205862|gb|BU965115.1|BU965115
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|17153690|gb|BM143623.1|BM143623
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|15285156|gb|BI469047.1|BI469047
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|24205298|gb|BU964551.1|BU964551
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|151397139|gb|EV267012.1|EV267012
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|4285594|gb|AI440926.1|AI440926
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|33388021|gb|CA851228.1|CA851228
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|26045622|gb|CA783155.1|CA783155
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|16346338|gb|BI971933.1|BI971933
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|6502218|gb|AW203591.1|AW203591
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|4396042|gb|AI495039.1|AI495039
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|151411465|gb|EV281276.1|EV281276
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|20207598|gb|BQ133687.1|BQ133687
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|24136031|gb|BU926541.1|BU926541
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|38193290|gb|CF922496.1|CF922496
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|38192834|gb|CF922040.1|CF922040
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|6481795|gb|AW201066.1|AW201066
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|6567363|gb|AW234974.1|AW234974
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|5753627|gb|AI960914.1|AI960914
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|18692813|gb|BM521661.1|BM521661
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATATTATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|213590604|gb|DB973335.1|DB973335
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|298199535|gb|HO042898.1|HO042898
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|6665970|gb|AW277429.1|AW277429
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|15662084|gb|BI699455.1|BI699455
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|14259966|gb|BG882874.1|BG882874
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|23729388|gb|BU762778.1|BU762778
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|17998752|gb|BI119562.1|BI119562
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
EST: gi|151410521|gb|EV280336.1|EV280336
EST:     AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTT                         AGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT
genomic: AGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTgtatcctttt ... tatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgaatgattaaatatgcttttcctgtgagtgtaaaccttgacctatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGATATTGTTCTTGCTGCAGCATATGCACATGAGCTGCCACAATATGGTCTTG
                                   aaccttgac  putative branch site 
                                           cctattt  CT-rich tract
        attaaatatgctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tacttaatatttgtttattattttatttatgcctttggtatggcatatgaatgattaaatatgcttttcctgtgagtgtaaaccttgacctatttactagAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGATATTGTTCTTGCTGCAGCATATGCACATGAGCTGCCACAATATGGTCTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC