1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaagttaatggtctcattcatcatataaccagttttatatgtattgtaattattcttacgaccatgtaaaattctgcagAGACTTGAGTAACAACAACCTTGGTGGCACCATACCATACCAACTTCCTCCTAATCTGCAGTACTT
species | Glycine max |
transcript | GLYMA07G05230.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTGGATCTTTGGGTTACCAGCTAGAACCCATGTCATCTGTGACAAACCT AGACTTGAGTAACAACAACCTTGGTGGCACCATACCATACCAACTTCCTCCEST: gi|193617299|gb|FK567517.1|FK567517
genomic: TCTGGATCTTTGGGTTACCAGCTAGAACCCATGTCATCTGTGACAAACCTgtaagttaat ... aattctgcagAGACTTGAGTAACAACAACCTTGGTGGCACCATACCATACCAACTTCCTCC
EST: TCTGGATCTTTGGGTTACCAGCTAGAACCCATGTCATCTGTGACAAACCT AGACTTGAGTAACAACAACCTTGGTGGCACCATACCATACCAACTTCCTCCEST: gi|193715037|gb|FK650202.1|FK650202
genomic: TCTGGATCTTTGGGTTACCAGCTAGAACCCATGTCATCTGTGACAAACCTgtaagttaat ... aattctgcagAGACTTGAGTAACAACAACCTTGGTGGCACCATACCATACCAACTTCCTCC
EST: TCTGGATCTTTGGGTTACCAGCTAGAACCCATGTCATCTGTGACAAACCT AGACTTGAGTAACAACAACCTTGGTGGCACCATACCATACCAACTTCCTCCEST: gi|213590529|gb|DB973302.1|DB973302
genomic: TCTGGATCTTTGGGTTACCAGCTAGAACCCATGTCATCTGTGACAAACCTgtaagttaat ... aattctgcagAGACTTGAGTAACAACAACCTTGGTGGCACCATACCATACCAACTTCCTCC
EST: TCTGGATCTTTGGGTTACCAGCTAGAACCCATGTCATCTGTGACAAACCT AGACTTGAGTAACAACAACCTTGGTGGCACCATACCATACCAACTTCCTCCEST: gi|193634847|gb|FK585266.1|FK585266
genomic: TCTGGATCTTTGGGTTACCAGCTAGAACCCATGTCATCTGTGACAAACCTgtaagttaat ... aattctgcagAGACTTGAGTAACAACAACCTTGGTGGCACCATACCATACCAACTTCCTCC
EST: TCTGGATCTTTGGGTTACCAGCTAGAACCCATGTCATCTGTGACAAACCT AGACTTGAGTAACAACAACCTTGGTGGCACCATACCATACCAACTTCCTCCEST: gi|193473755|gb|FK439696.1|FK439696
genomic: TCTGGATCTTTGGGTTACCAGCTAGAACCCATGTCATCTGTGACAAACCTgtaagttaat ... aattctgcagAGACTTGAGTAACAACAACCTTGGTGGCACCATACCATACCAACTTCCTCC
EST: TCTGGATCTTTGGGTTACCAGCTAGAACCCATGTCATCTGTGACAAACCT AGACTTGAGTAACAACAACCTTGGTAGGCACCATACCATACCAACTTCCTCEST: gi|5606215|gb|AI900313.1|AI900313
genomic: TCTGGATCTTTGGGTTACCAGCTAGAACCCATGTCATCTGTGACAAACCTgtaagttaat ... aattctgcagAGACTTGAGTAACAACAACCTTGGT-GGCACCATACCATACCAACTTCCTC
EST: TCTGGATCTTTGGGTTACCAGCTAGAACCCATGTCATCTGTGACAAACCT AGACTTGAGTAACAACAACCTTGGTGGCACCATACCATACCAACTTCCTCCEST: gi|193708511|gb|FK644959.1|FK644959
genomic: TCTGGATCTTTGGGTTACCAGCTAGAACCCATGTCATCTGTGACAAACCTgtaagttaat ... aattctgcagAGACTTGAGTAACAACAACCTTGGTGGCACCATACCATACCAACTTCCTCC
EST: TCTGGATCTTTGGGTTACCAGCTAGAACCCATGTCATCTGTGACAAACCT AGACTTGAGTAACAACAACCTTGGTGGCACCATACCATACCAACTTCCTCCEST: gi|193679135|gb|FK620629.1|FK620629
genomic: TCTGGATCTTTGGGTTACCAGCTAGAACCCATGTCATCTGTGACAAACCTgtaagttaat ... aattctgcagAGACTTGAGTAACAACAACCTTGGTGGCACCATACCATACCAACTTCCTCC
EST: TCTGGATCTTTGGGTTACCAGCTAGAACCCATGTCATCTGTGACAAACCT AGACTTGAGTAACAACA-CCTTGGTGGCACCATACCATACCAACTTCCTCC
genomic: TCTGGATCTTTGGGTTACCAGCTAGAACCCATGTCATCTGTGACAAACCTgtaagttaat ... aattctgcagAGACTTGAGTAACAACAACCTTGGTGGCACCATACCATACCAACTTCCTCC
ataaccagttttatatgtattgtaattattcttacgaccatgtaaaattctgcagAGACTTGAGTAACAACAACCTTGGTGGCACCATACCATACCAACTTCCTCCTAATCTGCAGTACTT
ttcttac putative branch site (score: 2)
agttttatatgtattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttaatggtctcattcatcatataaccagttttatatgtattgtaattattcttacgaccatgtaaaattctgcagAGACTTGAGTAACAACAACCTTGGTGGCACCATACCATACCAACTTCCTCCTAATCTGCAGTACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG