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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcccactctgtttaacatctggggtttaatttggagagagcaaatatttttgtgctggattttttgaagtttattggcttaaattttttctttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAGGAGGAAGCTCCGGCGGTTGATTATGCCATCACGGATTTCAATGCAGGTG

Basic information

species Glycine max
transcript GLYMA07G04890.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G04890.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G099657_T01 (Zea mays), 3'ss of exon 3
--------gcccactctgtttaacatc-tggggtttaatttggagagagcaaatatttttgtgctggattttttgaagtttattggcttaaattttttctttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAGGAGGAAGCTCCGGCGGTTGATTATGCCA---TCACGGATTTCAATGCAGGTG
        ||  |   || |   ||   ||   ||  |  ||  | ||    || ||||  || |  |  |||  |   ||||| | |  |||  | || ||  |||||||||||||||||||||| ||||| |||||||| || ||  | || |||||||| |  ||| ||||   ||| | |||     |||| |||| | | | ||   
gtatgctagcttatgatgctgtccaaaatgacattggagatgtggtgattccatgttttattggta-acatttccattcttatttgat--aataatgtcgtt--tgcagGTTGATCTGTTCTTCTACAGAGACCCAGAGGAAGCAAAGGAGCAGGAGGAGGAAGCTGCTGCGGCCCCTGAGTTTGCTGCAGTCACTGATTACCAAGGAG---

upper sequence: GLYMA07G04890.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G380152_T01 (Zea mays), 3'ss of exon 2
--------gcccactctgtttaacatc-tggggtttaatttggagagagcaaatatttttgtgctggattttttgaagtttattggcttaaattttttctttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAGGAGGAAGCTCCGGCGGTTGATTATGCCATCACGGATTTCAATGCAGGTG
        ||  |   ||||   ||   ||   ||  |  ||  | ||    |  ||||  || |  |  |||  |   ||||| | |  |||  | || ||  |||||||||||||||||||||| ||||| |||||||| || ||  | || |||||||| |  | | ||||   ||| | ||| |       |    |   ||| |
gtatgctagcttatgatgttgtccaaaatgacattggagatgtggtgattccaggttttattggta-acctttccattcttatttgat--aataatgtcgtt--tgcagGTTGATCTGTTCTTCTACAGAGACCCAGAGGAAGCAAAGGAGCAGGAGGAGGAAGCTGTTGCGGCCCCTGAGTTTGCTACAGTAACTGATTACCAAGGAG

upper sequence: GLYMA07G04890.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G092719_T01 (Zea mays), 3'ss of exon 3
--------gccca---ctctgtttaacatctggggtttaatttggagagagcaaatatttttgtgctggattttttgaagtttattggcttaaattttttctttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAGGAGGAAGCTCCGGCGGTTGATTATGCC---ATCACGGATTTCAATGCAGGTG
        ||  |   | ||||| || ||  |   ||  |  || |  |||   | |||||| || |    |||       || |||  | | | |  |  ||    |||||| |||||||||||||||||||| |||||||| || ||  | || |||||||| |  ||  ||||   ||| | ||||   ||||| |||| | | | ||   
gtatgctagcttatggcgctgttcaaaat--gacattagagatgcaatgagtccagatttttttggtaacctttgca----ttcttgtatgataatgctgttt----gcagGTCGATCTGTTCTTCTATAGAGACCCAGAGGAAGCAAAGGAGCAGGAGGAGGAAGTTGCCGCGGCCCCTGAGTTTGCCGCAATCACTGATTACCAAGGAG---

upper sequence: GLYMA07G04890.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G145308_T01 (Zea mays), 3'ss of exon 3
---gcccactctgtttaacatctggggtttaatttggagagagcaaatatttttgtgctggattttttgaagtttattggcttaaattttttctttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAGGAGGAAGCTCCGGCGGTTGATTATGCC---ATCACGGATTTCAATGCAGGTG
     | |   | |    |   |     | |  |||    ||    |  ||||  || |  | | |      ||   || |   ||| || | |     |||||||||||| |||||||| ||||| |||||||| || ||  |||| |||||||| |  ||   |||   ||| | ||||   ||||| |||| | | |  |   
gtatgctagcttatgatgctgttcaaaatgacattgtgatgattccaggttttattggtaaactctgcattcttatatgacaataatgttgttt-----gcagGTTGATCTATTCTTCTACAGAGATCCAGAGGAAGCAAAGGAACAGGAGGAGGAAGCTGCCGTGGCCCCTGAGTTTGCCGCAATCACTGATTACCAAGGGG---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58024454|gb|CX711195.1|CX711195
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|4283766|gb|AI440697.1|AI440697
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|254348667|gb|GR852346.1|GR852346
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|254333513|gb|GR848431.1|GR848431
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|193344624|gb|FK310704.1|FK310704
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|31307688|gb|CD392891.1|CD392891
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|151403869|gb|EV273679.1|EV273679
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|7041667|gb|AW471619.1|AW471619
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGANGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|209713306|gb|BW684393.1|BW684393
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|208299772|gb|GE099215.1|GE099215
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|192314595|gb|FK008131.1|FK008131
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|7685400|gb|AW756048.1|AW756048
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|19935381|gb|BQ080411.1|BQ080411
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|208043545|gb|GD843553.1|GD843553
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|208272288|gb|GE065822.1|GE065822
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|105632719|gb|DW246517.1|DW246517
EST:     ACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: ACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|120529097|gb|EH257231.1|EH257231
EST:     GTTGCAGATGAGGGGTACCATTCGCCCTGTGCCTCAA-TGGGATGTCATG                         GTTGATCTGTTCTTCT
genomic: GTTGCAGATGAGGGGTACCATTCGCCCTG-GCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCT
EST: gi|209699419|gb|BW664139.1|BW664139
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|207696810|gb|GD676483.1|GD676483
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|19935382|gb|BQ080412.1|BQ080412
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|193692112|gb|FK631067.1|FK631067
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|193467457|gb|FK432570.1|FK432570
EST:     ACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: ACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|193345602|gb|FK313727.1|FK313727
EST:     ATTCGACCGGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: ATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|254329049|gb|GR833421.1|GR833421
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAA-TGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|254348666|gb|GR852345.1|GR852345
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACA
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACA
EST: gi|209708217|gb|BW678587.1|BW678587
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|151397143|gb|EV267016.1|EV267016
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACC
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACC
EST: gi|209702183|gb|BW664625.1|BW664625
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|58019522|gb|CX706264.1|CX706264
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|193513035|gb|FK470905.1|FK470905
EST:     GGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: GGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|254336100|gb|GR841425.1|GR841425
EST:     GCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: GCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|193481667|gb|FK445610.1|FK445610
EST:     ACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: ACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|208183471|gb|GD982855.1|GD982855
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAA
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAA
EST: gi|192314596|gb|FK008132.1|FK008132
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|6915837|gb|AW397367.1|AW397367
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|120529603|gb|EH257737.1|EH257737
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGGCTCAAATGGGATGTCCTG                         GTTGATCTGTTCTTCT
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCT
EST: gi|58016477|gb|CX703219.1|CX703219
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|120529117|gb|EH257251.1|EH257251
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
EST: gi|24136637|gb|BU927147.1|BU927147
EST:     TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG
genomic: TGTTGCAGATGAGGGGTACCATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatt ... tttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttgtgctggattttttgaagtttattggcttaaattttttctttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAGGAGGAAGCTCCGGCGGTTGATTATGCCATCACGGATTTCAATGCAGGTG
                                      ttttttcttt  CT-rich tract
             attttttgaagtttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcccactctgtttaacatctggggtttaatttggagagagcaaatatttttgtgctggattttttgaagtttattggcttaaattttttctttggtgcagGTTGATCTGTTCTTCTATAGAGAACCAGAGGAGGCTAAACAACAAGAGGAGGAGGAAGCTCCGGCGGTTGATTATGCCATCACGGATTTCAATGCAGGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
-cccactc
- - - - - - - - - - ggggttt
- - - - - - - - - - - - - - - -tggagag
- - - - - - - - - - - - - - - - - - - - - - - - - - tgctgga