Sequence
atgc intronic sequence ATGC exonic sequence...ttttaataaagctcataacatatccacacattttgaatctcagtgaattaaatgtcttggtgaatattgaagtttgagctcattatttctgttcttgcagGGAATCAGGAGACCGTGGAAAGGTGTTCTCATGTTTGGACCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCACTT
Basic information
species | Glycine max |
transcript | GLYMA07G03820.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G03820.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv09s0002g05260.t01 (Vitis vinifera), 3'ss of exon 3
ttttaataaagctcataacatatccacacattttgaatctcagtgaattaaatgtct-tggtgaatattgaagtttgagctcattatttctgttcttg-cagGGAATCAGGAGACCGTGGAAAGGTGTTCTCATGTTTGGACCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCACTT
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-gcttatctcactattattaaattaaga-atttaagggacttttgtgttggaagtttgtattttttattcaggtcaagttttattgtttctttacttaacagGGAATTAGGAGACCATGGAAAGGTGTTCTTATGTTTGGTCCTCCTGGTACTGGCAAGACACTTTTGGCTAAAGCTGTTGCTACTGAGTGTGGTACAACAT
upper sequence: GLYMA07G03820.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ06179 (Selaginella moellendorffii), 3'ss of exon 4
ttttaataaagctcataacatatccacacattttgaatctcagtgaa-ttaaatgtcttggtgaatattgaagtttgagctcattatttctgttcttgcagGGAATCAGGAGACCGTGGAAAGGTGTTCTCATGTTTGGACCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCACTT
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------------------------------------------gtgagcttgactatgtcactaccta--gaagacttaacg-attttttctgt-----cagGGAATTCGTCGTCCATGGAAAGGTGTTCTGATGTTTGGGCCACCAGGTACTGGGAAAACTCTCTTGGCAAAGGCCGTGGCTACTGAATGCGGGACGACGT
upper sequence: GLYMA07G03820.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ36428 (Selaginella moellendorffii), 3'ss of exon 4
ttttaataaagctcataacatatccacacattttgaatctcagtgaattaaatgtcttggtgaatattgaagtttgagctcattatttctgttcttgcagGGAATCAGGAGACCGTGGAAAGGTGTTCTCATGTTTGGACCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCACTT
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--------------------------------gtgagcttgactatgtca--ctacctagaagacttcaaggatttcgacgattttttctgt-----cagGGAATTCGTCGTCCATGGAAAGGTGTTCTGATGTTTGGGCCACCAGGTACTGGGAAAACTCTCTTGGCAAAGGCCGTGGCTACTGAATGCGGGACGACGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151402734|gb|EV272547.1|EV272547EST: TTCTAGAAGAAGCTGTCGTTCTTCCTTTGTGGATGCCTGAATATTTCCAG GGAATCAGGAGACCGTGGAAAGGTGTTCTCATGTTTGGACCTCCAGGAACT
genomic: TTCTAGAAGAAGCTGTCGTTCTTCCTTTGTGGATGCCTGAATATTTCCAGgtaatcttga ... gttcttgcagGGAATCAGGAGACCGTGGAAAGGTGTTCTCATGTTTGGACCTCCAGGAACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattaaatgtcttggtgaatattgaagtttgagctcattatttctgttcttgcagGGAATCAGGAGACCGTGGAAAGGTGTTCTCATGTTTGGACCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCACTT
ttatttctgttctt CT-rich tract
aatattgaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttaataaagctcataacatatccacacattttgaatctcagtgaattaaatgtcttggtgaatattgaagtttgagctcattatttctgttcttgcagGGAATCAGGAGACCGTGGAAAGGTGTTCTCATGTTTGGACCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - -ccacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cttggtg